| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0292 |
|---|
| Symbol | holA |
|---|
| ID | 6407938 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 312862 |
|---|
| End bp | 313893 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642710202 |
|---|
| Product | DNA polymerase III subunit delta |
|---|
| Protein accession | YP_001989328 |
|---|
| Protein GI | 192288723 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1466] DNA polymerase III, delta subunit |
|---|
| TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.259297 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGCGC TTCGCGGCAA AGATGCCACC TCGTTTCTGG CCAGACCTGA TCCGGGCCGG
CCGATCGTGC TGCTGTACGG ACCTGATGCG GGCCTCGTGC GCGAACGCGC CGATGCGCTG
ATCGCGGCCT CGCTCGACGA TCCCAAAGAC CCATTCGCAT TGGTCCGACT TGATGGCGAC
GAACTCGCCG CGGAGCCGTC GCGGCTGGTC GACGAAGCCC TGGCGATTCC GATGTTCGGC
GGCCGGCGCG CGATCCGCGT TCGCGCCGGT TCGCGCAGTT TCGTCGCGGG CGTCGAAGCT
CTGATCACCT CGCCACCGCG GGAATGCCGC ATCGTGATCG AGGCCGGCGA TATCAAGCCG
GACAACGCGC TGCGCAAGGC CTGCGAGAAA GCCGCCACCG GCGCAGTCGC GATCGGCTGC
TATCCGGACG CCGAAGCTGA CATTGCCCGG CTGATCGACG ACGAACTGCG CGGCTCGAAT
CTGCAGATCG CCAAGGATGC TAGGGCGGTG CTGACGACAC TACTCGGCGG CGACCGCCAG
GCCTCGCGCA ACGAACTGCG CAAGCTTGCG CTTTACGCGC ATGGCAAGGG CGAGGTCACA
CTCGACGACG TGATCACCTG CGTGTCAGAT GCGTCCGATC TGAAACTCGA CGCGATCGTT
GATGCGGCGT TTTCCGGCAA GCCCGTCGTC GTCGAGACAG AATTCGCCAA GGCGATGGTG
GCCGGAACCT ATCCGGGTCA GATCATCCTG GCGGCGCAGC GCCACGCCGC GTTTCTGCAC
AAGACCAGCC TCGTGGTCGA AGGCGGTACG CCGGCCGCCG TGGTGCTCGA TTCCGGATTT
CCGCGGCTGC ATTTCTCCCG CAAGGCCGCA GCCGAGACGG CGCTCCGCAA TCTCTCGACG
ACCCGCCTCG CGCAGATCAT CGAGCAACTC GCGAGCGCCG CACTCGAAAC CCGCCGCCAA
GCCACACTCG GGGCAGCGAT CGCGCAGCGG ACGCTGCTAT CAATCGCCGT CAGCGCGAGG
CGCCGGAGTT AG
|
|---|
| Protein sequence | MVALRGKDAT SFLARPDPGR PIVLLYGPDA GLVRERADAL IAASLDDPKD PFALVRLDGD
ELAAEPSRLV DEALAIPMFG GRRAIRVRAG SRSFVAGVEA LITSPPRECR IVIEAGDIKP
DNALRKACEK AATGAVAIGC YPDAEADIAR LIDDELRGSN LQIAKDARAV LTTLLGGDRQ
ASRNELRKLA LYAHGKGEVT LDDVITCVSD ASDLKLDAIV DAAFSGKPVV VETEFAKAMV
AGTYPGQIIL AAQRHAAFLH KTSLVVEGGT PAAVVLDSGF PRLHFSRKAA AETALRNLST
TRLAQIIEQL ASAALETRRQ ATLGAAIAQR TLLSIAVSAR RRS
|
|---|
| |