| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0289 |
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| Symbol | |
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| ID | 6407935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 307746 |
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| End bp | 309419 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642710199 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001989325 |
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| Protein GI | 192288720 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCACGCA TCGCAATCGT CCGCAAGAAA GCCAAGCTCA GAGCCTTGCT CGGCATCCGT
GCCAGGCTCG TGGTGCTGGC GCTCATCCTG GTCTGTCCGC TGATGCTGGA CCGGGTGCGT
CTGCTCGAAG CGACGCGCAC CGCACAGCTC GCCGCGATGG CCAATGAGCT GTCGACGCTG
GCGCAGCGCA CCGCGGATGC CGAGCGCGAG GTGATCTCGT CGGTCGAAGC GGTGCTGAAA
TCAGCCGCCT ACGTGCACGC CGCCGCCGCC CAGGCGGGAC GAAGCTGCAG CATCCTGCGC
GCCAGCCTGC GGGTCGATCT GCCCTCGATC CGAATGCTGA TGGTGGCCGG CCCCGACGGC
GTGGTGCACT GTTCGACCTC TTCGATGTTC GTCGGCAGCA ACATCAGCGA CCGCCCGTAC
TTCCGTAAGG CTTTAGAAAC ACACGACTTT GTCGTGAGTG ACTTCCTGGT CGGCCGGCAG
ACCCAGAAGG GTACGATCCT GGCCGCCTAC CCGGTCTCGG CGATCGATAC CGGCGAAGAG
GCTGTGATCG TCGCCGGCAT GAATTTGGAC TGGCTGTCCG ACATGATGAG CAGCCTGGCC
GGCCGCGCCG GCGTCAACGC CGCCCTGATC GACGGCGAAG GCACCGTTCT GGCCGCGCCG
CCGGACGAGC GCAGCCTGAT CGGCAAGAAG CTCGACCGTT TGGCGCTGCT GCCGGCGATG
GCGGAGACGC CGCAAGGCCG CAGCAGCATT ACCATGCGGG ACGATGCCGG ACGGCTGATG
ACCGTGAGCC GGATTCCCGG CACCAGCGCC CGGCTGGTCG TGACCGTGGA CGAGAACAAG
GTCTCGGCCG GGATCAATCA CGACATCCGC ACCGCCTATC TGCAGCTGGC GCTGGTCTGC
CTGTTCGTGC TGCTCGGCGC GCTGATCGCG GCCGAACGGC TGATCGTCCA GCCGATTTCG
GTGCTGACCG GGGTCGCCAA GAAATTTGCC GAAGGCAACT GGTCGGCCCG GGTGGCGCGC
AAGCGGCTGC CGTCGGAATT CGTGCCGCTG GCGCGCGCGT TTAACGCGAT GGCGGCGCAG
CTCGGCCAGC GCGAACGTGA GCTGGTCGCC AGCAACAGCC GCCTGACCGT GATGGCCTCG
ATGGACCTGC TGTCGGGCCT CGCCAACCGC CGCGGCTTGC AGAGCCGGCT CGACTTCGAA
TGGATGAAGG GCCAGCAGAC CGGGCATCGC CTGGCGCTGA TGATGATCGA CGTCGACCAT
TTCAAGCTGT TCAACGATTC GTACGGCCAT CCCGAGGGTG ACGCCTGCCT CAGCCGGATC
GGCGAGACGC TGGCAGCGGT GGCCGACCAG ACCGGCGGGT TCGCGGCCCG TTACGGCGGC
GAGGAATTCT GCCTGCTGCT GCCGGAAACC GGGATCGGCC GCGCCCTCCA GGTCGGCGAG
CTGGTCCGCA CCACCGTCGA ACAGCTCGCT CTGCCGCATA AGACCAGTGC GTTCGAGCAT
GTTACCGTCA GCATCGGCGT CGCCTGTACG CTGCCGAGCG AACATGCCTC CCCGGCCGAG
CTGATCGAGG CCGCCGACGC GGCGCTGTAC GCGGCCAAAC ATCGCGGCCG CAACAATGTG
GTCGAGCACG GCTTCATCCG GGCCAGCGAC GGCCCGGTGG CGATGGCGAG CTGA
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| Protein sequence | MSRIAIVRKK AKLRALLGIR ARLVVLALIL VCPLMLDRVR LLEATRTAQL AAMANELSTL
AQRTADAERE VISSVEAVLK SAAYVHAAAA QAGRSCSILR ASLRVDLPSI RMLMVAGPDG
VVHCSTSSMF VGSNISDRPY FRKALETHDF VVSDFLVGRQ TQKGTILAAY PVSAIDTGEE
AVIVAGMNLD WLSDMMSSLA GRAGVNAALI DGEGTVLAAP PDERSLIGKK LDRLALLPAM
AETPQGRSSI TMRDDAGRLM TVSRIPGTSA RLVVTVDENK VSAGINHDIR TAYLQLALVC
LFVLLGALIA AERLIVQPIS VLTGVAKKFA EGNWSARVAR KRLPSEFVPL ARAFNAMAAQ
LGQRERELVA SNSRLTVMAS MDLLSGLANR RGLQSRLDFE WMKGQQTGHR LALMMIDVDH
FKLFNDSYGH PEGDACLSRI GETLAAVADQ TGGFAARYGG EEFCLLLPET GIGRALQVGE
LVRTTVEQLA LPHKTSAFEH VTVSIGVACT LPSEHASPAE LIEAADAALY AAKHRGRNNV
VEHGFIRASD GPVAMAS
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