| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0251 |
|---|
| Symbol | dapF |
|---|
| ID | 6407895 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 266937 |
|---|
| End bp | 267818 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642710159 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_001989287 |
|---|
| Protein GI | 192288682 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.185112 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGC TGGATAACCG CCTGTTCGCC AAGATGAACG GCATCGGCAA CGAGATCGTG
GTGGTCGACC TGCGCGATCA GCCGGCGCCG GTGACGCCGG CCGATGCGCG GGCGGTGGCG
GCGCACGTGC CCTACGATCA GCTGATGCTG CTGCAACCGG CGCGGCTGCC CGGCACCGAA
GCCTTCGTCC GGATCTACAA CAATGACGGC TCCGAATCCG GCGCCTGTGG TAACGGCATG
CGCTGCGTCG CGCGGCAAAT GTTTGCAGGC AGCGACAAGA ACGGCCTGAC CTTCGAGACC
CGCGCCGGCC TGCTCAATTG CTGGCGGGGC CCGGCCGACG GCCTCTACAC CGTCGACATG
GGTGAGCCGA AGTTCGGCTG GCAGGACATC CCGCTCGCCG AGGAATTCCG CGATACCCGG
ATGATCGAAC TGCAGATCGG CCCGATCGAC GCGCCGGTGC TGCATACGCC GTCGGTGGTC
AGCATGGGCA ATCCGCACGC GATCTTCTGG GTCGACGATG TGAACGCCTA CGATCTCGGC
CGGTTCGGAC CGCTGCTCGA GAACCACCCG ATCTTCCCCG AGCGCGCCAA CATCACGCTC
GCCCACATCG TCGACCGTCA GCACATCACC ATGCGGACCT GGGAACGCGG CGCCGGGCTG
ACCAAGGCGT GCGGCTCTGC CGCATGCGCC ACTGCTGTCG CGGCGGCGCG GCTGAAGCGC
ACCGACCGGA CTGTCGAGAT GACGCTGCCG GGCGGCCAAC TCACCATCGA GTGGCGCGAC
AACGACAATC ACGTGCTGAT GACCGGCGGC GCCGAATTCG AGTTCGAAGG CCGGTTCGAC
CCGGCACTAT TCGCCGGCGC GCTCGACCCG ACTGGCGCCT GA
|
|---|
| Protein sequence | MSALDNRLFA KMNGIGNEIV VVDLRDQPAP VTPADARAVA AHVPYDQLML LQPARLPGTE
AFVRIYNNDG SESGACGNGM RCVARQMFAG SDKNGLTFET RAGLLNCWRG PADGLYTVDM
GEPKFGWQDI PLAEEFRDTR MIELQIGPID APVLHTPSVV SMGNPHAIFW VDDVNAYDLG
RFGPLLENHP IFPERANITL AHIVDRQHIT MRTWERGAGL TKACGSAACA TAVAAARLKR
TDRTVEMTLP GGQLTIEWRD NDNHVLMTGG AEFEFEGRFD PALFAGALDP TGA
|
|---|
| |