Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0216 |
Symbol | sdhA |
ID | 6407860 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 234650 |
End bp | 236473 |
Gene Length | 1824 bp |
Protein Length | 607 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642710124 |
Product | succinate dehydrogenase flavoprotein subunit |
Protein accession | YP_001989252 |
Protein GI | 192288647 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup [TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.493342 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGGCGA ACGTCAACGG CGCCCCGGCG GCGGGCGGCT ACGCCTATCC GATCGAGGAC CACACCTACG ACGTCGTGGT GGTCGGCGCC GGCGGCGCGG GGTTGCGCGC AGTGGTCGGC TGCAGCGAAG CGGGCCTGCG CACCGCCTGC ATCACCAAGG TGTTCCCGAC CCGCTCGCAC ACCGTGGCTG CCCAGGGCGG CATCTCGGCC TCGCTCGGCA ACATGCATAA GGATGACTGG CGCTGGCACA TGTACGACAC CGTGAAGGGG TCGGACTGGC TCGGCGATCA GGACTCGATC GAGTACATGG TCCGCAACGC GCCGGAAGCC GTGTACGAAC TCGAGCATTG GGGTGTGCCG TTCTCGCGCA CCGAAGACGG TAAGATCTAT CAGCGGCCGT TCGGCGGCAT GACGATGGAT TTCGGCAAGG GCCAGGCGCA GCGCACCTGC GCGGCCGCCG ACCGCACCGG CCACGCCATG CTGCACACGA TGTACGGTCA GGCGCTGCGC CACTCGGCTG AGTTCTACAT CGAGTTCTTC GCCATCGACC TGATCATGGA CGATCAGGGC TGCTGCCGCG GCGTCGTGGC GCTGAAGCTC GACGACGGCA CCATCCATCG TTTCAAGGCG CAGACCACCA TTCTGGCGAC CGGCGGCTAC GGCCGTGCCT ACGCCTCCTG CACGTCGGCG CACACCTGCA CCGGCGACGG CGGCGCGATG GCGTTGCGCG CCGGCCTGCC GCTGCAGGAC ATGGAGTTCG TTCAGTTCCA CCCGACCGGC ATCTACGGCT CGGGCTGTCT GGTGACCGAA GGCGCCCGCG GCGAGGGTGG CTATCTGGTC AACTCCGAGG GCGAGCGCTT CATGGAGCGC TATGCGCCGT CGGCCAAGGA CCTCGCCTCG CGCGATGTCG TTTCGCGCGC AATGACCATC GAAATGCGCG AAGGTCGCGG CGTCGGCAAG AAGAAGGACC ACATCTTCCT GCACCTCGAC CATCTGGCGC CGGAAGTGCT GCACGAGCGG CTGCCGGGCA TCTCGGAATC GGCACGGATC TTCGCCGGCG TCGACGTCAC CCGCGAGCCG ATCCCGATCC TGCCGACCGT GCACTACAAC ATGGGCGGCA TCCCGACGAA CTTCCACGGC GAAGTCGTGA CCAAGAAGGA CGGCGACGAC AACGCAGTGG TGCCGGGCCT GATGGCGATT GGCGAAGCGG CCTGCGTGTC GGTGCACGGC GCCAACCGCC TCGGTTCCAA CTCGCTGATC GACCTCGTGG TGTTCGGCCG CGCCGCAGCG CTGCGCTGCG CCGAGAAGCT GGTGCCGAAC GGCAAGCAGC CTGAACTGCC GGCCAGCTCC GCCGACATGT CGCTGTCGCG GCTCGACAAG TATCGTTACG CCAAGGGCGG CACCCCGACC GCCAAGCTGC GCGAGCGGAT GCAGCACGTG ATGCAGAACA ACTGCGCGGT GTTCCGCACC GGCGAAGTGC TCGCCGAGGG CAAGGAACTG ATCGCCAACG TCCATGGCAG CGTCGGCGAC GTCGGCGTGT CGGATCGCAC GCTGGTGTGG AATTCCGATC TCGTCGAGAC ACTGGAATTC GACAATCTGA TCGTCCAGGC GGTGGTGACG ATGAACTCCG CCGCCAACCG CACCGAGAGC CGCGGCGCCC ACGCCCGCGA AGACTTCCCG GATCGCGATG ACGCCAACTG GATGAAGCAC ACGCTGGCCT GGATCGGTGA CAAGGGCGAC GTGACCATCG ATTATCGGCC GGTGCACGAC TACACGATGA CCAACGACGT CCAGTACATT CCGCCGAAGC CGCGGGTGTA TTGA
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Protein sequence | MAANVNGAPA AGGYAYPIED HTYDVVVVGA GGAGLRAVVG CSEAGLRTAC ITKVFPTRSH TVAAQGGISA SLGNMHKDDW RWHMYDTVKG SDWLGDQDSI EYMVRNAPEA VYELEHWGVP FSRTEDGKIY QRPFGGMTMD FGKGQAQRTC AAADRTGHAM LHTMYGQALR HSAEFYIEFF AIDLIMDDQG CCRGVVALKL DDGTIHRFKA QTTILATGGY GRAYASCTSA HTCTGDGGAM ALRAGLPLQD MEFVQFHPTG IYGSGCLVTE GARGEGGYLV NSEGERFMER YAPSAKDLAS RDVVSRAMTI EMREGRGVGK KKDHIFLHLD HLAPEVLHER LPGISESARI FAGVDVTREP IPILPTVHYN MGGIPTNFHG EVVTKKDGDD NAVVPGLMAI GEAACVSVHG ANRLGSNSLI DLVVFGRAAA LRCAEKLVPN GKQPELPASS ADMSLSRLDK YRYAKGGTPT AKLRERMQHV MQNNCAVFRT GEVLAEGKEL IANVHGSVGD VGVSDRTLVW NSDLVETLEF DNLIVQAVVT MNSAANRTES RGAHAREDFP DRDDANWMKH TLAWIGDKGD VTIDYRPVHD YTMTNDVQYI PPKPRVY
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