Gene Rpal_0200 details

Gene Information

• Locus tag: Rpal_0200
• ID: 6407844
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 221076
• End bp: 221678
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 642710108
• Product: cytochrome c biogenesis protein CcmA
• Protein accession: YP_001989236
• Protein GI: 192288631
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG4133] ABC-type transport system involved in cytochrome c biogenesis, ATPase component
• TIGRFAM ID: [TIGR01189] heme ABC exporter, ATP-binding protein CcmA

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.0402446
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGGCTGT CGGGGCGCGA CTTACGGTGT GTACGAGGTG GCCGCGAGGT ATTCGCCGGA 
CTGGCCTTCG AGGCGAGCGG CGGCGAAGCG CTGGCGCTGG TCGGACACAA CGGCGCCGGC 
AAGACGTCGC TCTTGCGGCT GATCGCCGGG CTGCTGACAC CGGAGGCTGG AACCATCACG 
CTCGACGGCG GGGAACCGGA TACGCCGGTC GCCGAACAGG CGCACTATCT CGGCCATCGC 
GACGCGCTCA AGCCGTCGCT CAGCGTTGGT GAGAATCTCG GCTTCTGGCG CGATTTTCTC 
GGCGGCGAAC GGACCGATCT GAGCGCCGGC ATCAAGGCGG TCGGGCTCGG CCATGCGGCC 
GAACTGCCGG CGGCGTATCT GTCGGCCGGC CAGCGCCGGC GGCTGTCGAT TGCCCGCCTG 
CTGGTGGTGC GGCGGCCGAT CTGGCTGCTC GACGAACCGA CCTCGGCGCT CGACGTCAAA 
GGCCAGGAGC TGTTCGTCGG CCTGATGCAG GATCACCTCA CCCGCGGCGG CATCATCGTC 
GCCGCCACCC ACACGCCGCT CGGCATTCCG GTGCGCGAGC AGCGGATCGG AGCCGCGACA 
TGA 

 

Protein sequence

MRLSGRDLRC VRGGREVFAG LAFEASGGEA LALVGHNGAG KTSLLRLIAG LLTPEAGTIT 
LDGGEPDTPV AEQAHYLGHR DALKPSLSVG ENLGFWRDFL GGERTDLSAG IKAVGLGHAA 
ELPAAYLSAG QRRRLSIARL LVVRRPIWLL DEPTSALDVK GQELFVGLMQ DHLTRGGIIV 
AATHTPLGIP VREQRIGAAT