| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0183 |
|---|
| Symbol | |
|---|
| ID | 6407827 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 198491 |
|---|
| End bp | 199744 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642710093 |
|---|
| Product | dihydrolipoamide succinyltransferase |
|---|
| Protein accession | YP_001989221 |
|---|
| Protein GI | 192288616 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR01347] 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAA TTCGCGTTCC GACGCTCGGT GAATCGGTGA CCGAGGCGAC CATCGGCCGC
TGGTTCAAGA AGCCTGGTGA GGCGGTGGCT GTCGATGAGC CGCTCGTCGA GCTCGAAACC
GACAAGGTGA CCATTGAAGT GCCGGCCCCG TCGGCCGGTA CGCTCGGCGA AATCGTCGCC
AAGGACGGCG AGACCGTTGC GGTCGGCGCG TTGCTCGGCC AGATCACCGA TGGCGCCGCC
CCGGCCAAGC CGGCTGCGGC TGCTCCGGCG AAGGCTGCGG CCCCGGCTGC TGCGCCTGCC
CCGGCGGCAC CGGCCCCCGC GGCTGCTCCC GCCGCCAAGG CTCCGCCGTC CGATGCGCCG
CTGGCGCCGT CGGTGCGCCG GCTGTCAACC GAGAGCGGCG TCGACGCCTC GACCGTGCCG
GGCTCCGGCA AGGACGGTCG CGTCACCAAG GGCGATATGC TGGCGGCGAT CGAGAAGGCG
GCCTCGGCGC CGACCCCGGT CAATCAGCCT GCCGCCGCGG TGCAGGTCCG CGGGCCGTCT
CCGGCCGACG ACGCCGCACG CGAAGAGCGG GTGAAGATGA CCCGGCTGCG CCAGACCATC
GCGCGCCGCC TGAAGGAAGT GCAGAACACC GCCGCGATGC TGACGACCTT CAACGAGGTC
GACATGACCA ACGTCATGGC GCTGCGCGCG CAGTACAAGG ACGTGTTCGA GAAGAAGCAC
GGCGCCAAGC TCGGCTTCAT GGGCTTCTTC ACCAAGGCCT GCGTTCAGGC CCTGAAGGAT
ATCCCGGCGG TGAACGCCGA GATGGACGGC ACCGACCTGA TCTACAAGAA CTACTACCAC
ATCGGCGTCG CCGTCGGCAC CGACAAGGGT CTCGTGGTCC CGGTGGTGCG CGACTGCGAC
GAGAAGTCGA TCGCCGACAT CGAAAAGAGC ATCGTCGACT ACGGCAAGCG TGCCCGTGAC
GGTCAGCTCA AGATCGAGGA GATGCAGGGC GGTACCTTCA CGATCACTAA CGGCGGGATC
TACGGTTCGC TGATGTCGAC CCCGATCCTG AACGCGCCGC AGTCCGGCAT CCTCGGCATG
CACAAGATCC AGGAACGCCC GGTTGTGATC GGCGGCAAGA TCGAAGTCCG CCCGATGATG
TATTTGGCGC TGAGCTATGA TCACCGCGTG ATCGACGGCA AGGAAGCCGT GACCTTCCTG
GTTCGCGTCA AGGAGAGCCT GGAAGACCCG GCGCGCCTGG TGCTGGATCT CTGA
|
|---|
| Protein sequence | MTEIRVPTLG ESVTEATIGR WFKKPGEAVA VDEPLVELET DKVTIEVPAP SAGTLGEIVA
KDGETVAVGA LLGQITDGAA PAKPAAAAPA KAAAPAAAPA PAAPAPAAAP AAKAPPSDAP
LAPSVRRLST ESGVDASTVP GSGKDGRVTK GDMLAAIEKA ASAPTPVNQP AAAVQVRGPS
PADDAAREER VKMTRLRQTI ARRLKEVQNT AAMLTTFNEV DMTNVMALRA QYKDVFEKKH
GAKLGFMGFF TKACVQALKD IPAVNAEMDG TDLIYKNYYH IGVAVGTDKG LVVPVVRDCD
EKSIADIEKS IVDYGKRARD GQLKIEEMQG GTFTITNGGI YGSLMSTPIL NAPQSGILGM
HKIQERPVVI GGKIEVRPMM YLALSYDHRV IDGKEAVTFL VRVKESLEDP ARLVLDL
|
|---|
| |