| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0180 |
|---|
| Symbol | |
|---|
| ID | 6407824 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 195842 |
|---|
| End bp | 197245 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642710090 |
|---|
| Product | dihydrolipoamide dehydrogenase |
|---|
| Protein accession | YP_001989218 |
|---|
| Protein GI | 192288613 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACCT ACGATCTCGT CGTCATCGGC ACCGGCCCCG GCGGCTACGT CTGCGCGATT
CGCGCGGCGC AACTCGGCCT CAAGGTGGCG GTGGTCGAGA AAAACGCCAC GCTCGGCGGC
ACCTGCCTGA ACGTCGGCTG CATGCCGTCG AAGGCGCTGC TGCATGCCTC CGAACTGTTC
GAGGAAGCCG GGCATTCGTT CGCCAAGATG GGCATCGGCG TGCCGGCCCC GAAGCTCGAT
CTACCGGCGA TGATGAACTT CAAGCAGCAG GGTATCGACG GCAACGTCAA AGGCGTCGAA
TACCTGATGA AGAAGAACAA GATCGACGTG CTGGTCGGCA AGGGCAAGAT CCTCGGCACC
GGCAAGGTCG AGGTGACGGG CGCCGACGGC AAGGCCTCCA GCGTCGACAC CAAGTCGATC
GTGATCGCCT CCGGCTCGGC TGTGGCTCAG CTCAAGGGCA TCGAGATCGA TGAGAAGCGC
GTGGTGTCGT CCACCGGCGC GCTGTCGCTC GACAAGGTCC CGGGCAAGCT GATCGTTGTC
GGCGCCGGCG TGATCGGGCT CGAGCTTGGC TCGGTGTGGC GGCGCCTCGG CGCCGAGGTC
ACCGTGGTCG AATTCCTCGA CCGCATCTTG CCGGGCATGG ACGGCGAGGT GGTCAAGCAA
TTCCAGCGCA TCCTCGAGAA GCAGGGCTTT GCCTTCAAGC TCGGCGCCAA GGTCACCGGT
GTCGACACCT CGGGCGCCAA GCTTGCCGTG AAGGTCGAGG CGGCGGCCGG TGGCAATCCG
GAAACGCTGG AAGCCGACGT GGTGCTGGTC GCGATCGGCC GCGTCCCCTA CACCGAAGGC
CTCGGCCTAA AGGAGGCCGG CGTTGCGCTC GACGAGCGCG GCCGGGTGGT GATCGACGAC
CACTTCGCCA CCAGCCTCAA GGGCGTGTAC GCGATCGGCG ACGTGGTGCG CGGCCCGATG
CTGGCCCATA AGGCCGAGGA CGAAGGCGTT GCGGTTGCCG AGTTGATCGC CGGCAAGGCC
GGCCACGTCA ATTACGACGT CATTCCGGGC GTGGTCTACA CGACGCCGGA AGTGTCGAGC
GTCGGCAAGA CCGAAGAGGA CCTCAAGCAG GCCGGCGTCG CCTATACGGT CGGGAAATTC
CCGTTCACCG CCAACGGCCG CTCCAAGGTC AACCAGACCA CCGACGGCTT TGTGAAGATC
TTGGCCGACG CCAAGACCGA CCGTGTTCTC GGCGTCCACA TCATCGGCCG TGAGGCCGGC
GAGATGATCC ACGAAGCGGC CGTGCTGATG GAGTTCGGCG GCTCTGCCGA AGATCTGGCC
CGCACCTGCC ACGCCCATCC GACCCGCTCG GAGGCCATCA AGGAGGCCGC CCTTACGGTC
GGCAAGCGCG CCATCCATAT GTGA
|
|---|
| Protein sequence | MATYDLVVIG TGPGGYVCAI RAAQLGLKVA VVEKNATLGG TCLNVGCMPS KALLHASELF
EEAGHSFAKM GIGVPAPKLD LPAMMNFKQQ GIDGNVKGVE YLMKKNKIDV LVGKGKILGT
GKVEVTGADG KASSVDTKSI VIASGSAVAQ LKGIEIDEKR VVSSTGALSL DKVPGKLIVV
GAGVIGLELG SVWRRLGAEV TVVEFLDRIL PGMDGEVVKQ FQRILEKQGF AFKLGAKVTG
VDTSGAKLAV KVEAAAGGNP ETLEADVVLV AIGRVPYTEG LGLKEAGVAL DERGRVVIDD
HFATSLKGVY AIGDVVRGPM LAHKAEDEGV AVAELIAGKA GHVNYDVIPG VVYTTPEVSS
VGKTEEDLKQ AGVAYTVGKF PFTANGRSKV NQTTDGFVKI LADAKTDRVL GVHIIGREAG
EMIHEAAVLM EFGGSAEDLA RTCHAHPTRS EAIKEAALTV GKRAIHM
|
|---|
| |