| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0176 |
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| Symbol | |
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| ID | 6407820 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 191082 |
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| End bp | 193292 |
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| Gene Length | 2211 bp |
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| Protein Length | 736 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642710086 |
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| Product | primosome assembly protein PriA |
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| Protein accession | YP_001989214 |
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| Protein GI | 192288609 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase |
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| TIGRFAM ID | [TIGR00595] primosomal protein N' |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGATT TGCCGACCAG CAGCCCGGCC TCCCACGCGC CTGCCAGCGT CGTCGACGTG
CTGGTGCCGG TCGCGATCGA TCAGGCCTAT TCGTACCGGG TTCCGCGCGG CCTTTCGCTG
AAACCCGGAG ACGTCGTGGC TGTGCCGCTG GGCGCTCGTG AAGTGCTCGG CGTGGTCTGG
GCGGAGAATC CGAATCCCGA CCCGCGGCTG CACAATCGCC TCAAGGATGT GGCCGAAAAG
CTCGACGTAC CGCCGCTGCG CGACGAACTC CGCCGGATGG TCGACTGGGT TTCGACCTAC
ACGCTGTCGG CGCGCGGGAT GGTGCTGCGG ATGTGCTTGC GGATGGGCGA GCATCTCGGC
CCGGAGCGGC AGCGCATGGG GGTGCGGCTG GTGGGCTCGC CGCCGCAGCG GATGACGCCA
GCGCGCCGCC GCCTGCTCCA GATCCTGTCG GACGGGCTGC TGCACGGCAA ATCCGACGTC
GCCAAGGAAG CCGGCGTCAG CCCCGGCGTG ATCGACGGCC TGGTCGACGA GGGCACCCTG
CAGGTCGAGC AGATGCCGCG CGAAAACCCG GCGCCGGAGC CCGATCCGGA TTTCGCGCCG
GCCGACTTTT CGCCCGAGCA GGCCCGTGCG GCCGAGACGA TGCGCGGCCT TGTGACCGCC
GGCGGCTTTC AGGCGGCGCT GATCGACGGC GTCACCGGCT CCGGCAAGAC CGAAGTGTAT
TTCGAGGCGG TCGCCGAGGT CATTCGGCAG GGCCGGCAGA GCCTGATCCT GATGCCGGAG
ATCGCGCTGA CCGGGCAGTT TCTCGACCGC TTCGCACAGC GATTCGGTGT GCGGCCGCTG
GAATGGCATT CCGAACTGAC CCCGCGCACC CGCGCGCGCA ACTGGGCTTC GATCGCCGCC
GGCGAAGCCC GCGTCGTGGT CGGCGCGCGC TCGGCGCTGT TTCTGCCTTA CGCCGATCTC
GGGCTGATCA TCGTCGATGA AGAGCACGAC CAGGCCTACA AGCAGGAGGA CGGCGCGCAT
TATCACGCCC GCGACATGGC GGTGGTGCGG GCTTCGATCG CGAAAATTCC GATCGTGCTG
GCGTCGGCGA CGCCATCGGT CGAGACCGAG GTCAATGCCC GTAAGGGGCG CTACACGCGG
ATTCCGCTGC CGTCACGATT CGGCGGTCAG CACATGCCGC AGATCGAAGC GATCGATCTG
CGGCGCGAGC CGCCGATGCG CGGCCGCTTC ATTTCGCCGC GGCTCGCCGA GCAGATCGGT
TTTGCGATCG AGCGGCGTGA ACAGGCGCTG CTGTTTCTCA ATCGCCGCGG CTATGCGCCG
CTGACGCTGT GCCGCGCCTG CGGCCATCGC TTTGCCTGCA CCATCTGCGA CGCCTGGCTG
GTCGATCACC GCTTCCGGCA GCGCCTGGTG TGCCACCATT GCGGGTTCTC GATGCCGCGG
CCGCCAGCCT GTCCGCATTG CGGCGCCGAG GGCTCGCTGG TCGCGGTCGG GCCCGGCGTC
GAACGGCTGC AGGAAGAGGC GGCGAACCTG TTTCCCAATG CCCGCACCAT GGTGCTGTCG
AGCGATCTGA TTACGTCGAT CGAGACGATG CGCGCCGAGC TGAACGAGAT AGCGGAGGGC
CGGGTCGACA TCATCATCGG TACCCAGCTC GTCGCCAAGG GCCATAATTT CCCGCGGCTC
AATCTGGTCG GCGTGGTCGA TGCCGACCTC GGCCTGTCCA ACGGCGATCC GCGCGCCGCC
GAGCGCACCT TCCAGCTGCT CAATCAGGTG ATCGGCCGTG CCGGCCGCGA TCAGGGCCGC
GGCGTTGGCT TCCTGCAGAC CCATCAGCCC GAGCATCCGG TGATGAAGGC GCTGGTCGCC
TGTGACCGCG AGGCGTTTTA CGCCAGTGAA ATCGATATCC GCGAGCGCAC GCTGTATCCG
CCGTTTGGCC GGCTTGCGAG CCTGATCATC TCGGCCGGCG ACCGGCCGAC CGCAGAAGGC
TTCGGCCGCC AGCTCGCCAG TGCCGCGCCG TTCGATGAGC GCGTGCAAGT GCTGGGCCCG
GCCGAAGCGC CGCTCGCGGT GATCAAGGGG CGCTATCGAT TCCGGCTGCT GGTGAAATCG
GTGCGCGGCT TCGACCTGTC GAACTACTTA CGCTCTTGGC TGGCCAAAGG ACCCAAGACA
AAAGGTAATC TCAAGCTCGA GGTCGACGTC GATCCGCAAA GCTTTCTGTG A
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| Protein sequence | MDDLPTSSPA SHAPASVVDV LVPVAIDQAY SYRVPRGLSL KPGDVVAVPL GAREVLGVVW
AENPNPDPRL HNRLKDVAEK LDVPPLRDEL RRMVDWVSTY TLSARGMVLR MCLRMGEHLG
PERQRMGVRL VGSPPQRMTP ARRRLLQILS DGLLHGKSDV AKEAGVSPGV IDGLVDEGTL
QVEQMPRENP APEPDPDFAP ADFSPEQARA AETMRGLVTA GGFQAALIDG VTGSGKTEVY
FEAVAEVIRQ GRQSLILMPE IALTGQFLDR FAQRFGVRPL EWHSELTPRT RARNWASIAA
GEARVVVGAR SALFLPYADL GLIIVDEEHD QAYKQEDGAH YHARDMAVVR ASIAKIPIVL
ASATPSVETE VNARKGRYTR IPLPSRFGGQ HMPQIEAIDL RREPPMRGRF ISPRLAEQIG
FAIERREQAL LFLNRRGYAP LTLCRACGHR FACTICDAWL VDHRFRQRLV CHHCGFSMPR
PPACPHCGAE GSLVAVGPGV ERLQEEAANL FPNARTMVLS SDLITSIETM RAELNEIAEG
RVDIIIGTQL VAKGHNFPRL NLVGVVDADL GLSNGDPRAA ERTFQLLNQV IGRAGRDQGR
GVGFLQTHQP EHPVMKALVA CDREAFYASE IDIRERTLYP PFGRLASLII SAGDRPTAEG
FGRQLASAAP FDERVQVLGP AEAPLAVIKG RYRFRLLVKS VRGFDLSNYL RSWLAKGPKT
KGNLKLEVDV DPQSFL
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