Gene Rpal_0170 details

Gene Information

• Locus tag: Rpal_0170
• Symbol: atpC
• ID: 6407814
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: -
• Start bp: 184618
• End bp: 185025
• Gene Length: 408 bp
• Protein Length: 135 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 642710080
• Product: F0F1 ATP synthase subunit epsilon
• Protein accession: YP_001989208
• Protein GI: 192288603
• COG category: [C] Energy production and conversion
• COG ID: [COG0355] F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)
• TIGRFAM ID: [TIGR01216] ATP synthase, F1 epsilon subunit (delta in mitochondria)

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.41505
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCACCT TCCACTTCGA TCTGGTTTCG CCCGAAATGG TCGCCTTCTC CGGCGATGTC 
GATCAGGTCG ACATTCCGGG CGCCGAGGGT GACTTCGGCG TGCTCGCCGG CCACGCGCCG 
GTGGTGGCGG TGATCCGCCC CGGCATCCTC ACCGTGACGG CGGGTGCCAA CAAGCAGAAG 
ATCGTCGTGC TCGGCGGCAT CGCCGAAGTG TCCGACAAGG GCCTCACCGT GCTGGCCGAC 
GTCGCCACTC CGGCGCCGGA CGTCGACCTG CAGGACTTTG CCGCGACCAT CCAGACGATG 
GAGCAGCAGA TCCCCGGCAA GGTCGGCGAC GAACTCGACC GCGCGATCGA GCGCCTGGAT 
CACTTCAAGA GCATCCAGCA CGAACTCAAC ACCACCGCGA TGCACTAA 

 

Protein sequence

MSTFHFDLVS PEMVAFSGDV DQVDIPGAEG DFGVLAGHAP VVAVIRPGIL TVTAGANKQK 
IVVLGGIAEV SDKGLTVLAD VATPAPDVDL QDFAATIQTM EQQIPGKVGD ELDRAIERLD 
HFKSIQHELN TTAMH