Gene Rpal_0162 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0162 
Symbol 
ID6407806 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp176250 
End bp176732 
Gene Length483 bp 
Protein Length160 aa 
Translation table11 
GC content64% 
IMG OID642710072 
ProductrRNA large subunit methyltransferase 
Protein accessionYP_001989200 
Protein GI192288595 
COG category[S] Function unknown 
COG ID[COG1576] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00246] rRNA large subunit m3Psi methyltransferase RlmH 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGACTAT TGATCCTGGC TGTCGGGAAG CTGAAACAGG GGCCGGAGCG CGAGCTCGCC 
GAGCGATATC GGGCGCGGTT CGACGACCTC GGCCGCAAGC TCGGCTTTCG CGGTCTTGAT
GTCCATGAAA TTGCCGAAAG CCGCGCCCGC GAGGCGCCGG CACGGATGGC GGAAGAAGCC
GCCGCGATCA TCGCTCAGGT GCAGGACGGG GCTGTGCTGG TTACGCTCGA CGAGCGCGGC
CAGAGCCTTG GCAGCACGGC CTTCGCCGCT CAGCTCGGCC GCTGGCGGGA CGAGCAGGTG
CCCGGTACTA TTTTCGTGAT CGGCGGAGCC GACGGACTTT TGCCTGAATT GCGGCGCAAG
GCAAAGCTGA GCATGTCGTT CGGGGGGGCG ACATGGCCGC ACCAAATGGT TCGCGTGATG
CTGCTGGAGC AGATCTATCG GGCCGCGACG ATTTTGGCGG GACATCCTTA TCATCGTGCG
TAA
 
Protein sequence
MRLLILAVGK LKQGPERELA ERYRARFDDL GRKLGFRGLD VHEIAESRAR EAPARMAEEA 
AAIIAQVQDG AVLVTLDERG QSLGSTAFAA QLGRWRDEQV PGTIFVIGGA DGLLPELRRK
AKLSMSFGGA TWPHQMVRVM LLEQIYRAAT ILAGHPYHRA