| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0125 |
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| Symbol | |
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| ID | 6407768 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 136785 |
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| End bp | 139064 |
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| Gene Length | 2280 bp |
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| Protein Length | 759 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642710034 |
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| Product | GAF sensor signal transduction histidine kinase |
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| Protein accession | YP_001989163 |
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| Protein GI | 192288558 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.812946 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTGAGG CCGACAGCGG CGGCATCGTC ACCGCCAGGA ACGTCGACCT GTCGAGCTGC
GACCGCGAGC TGGTGCAATA TCCGGAGGCG ATCCAGCCGC ACGGCGCGAT GCTCACCGTC
GACGAGCAAT CCGACCGGGT GCTGCACGCC AGTGCCAATT GCGCGGCGTT TATCGGCAAG
CCGCCGGAAG CGGTAATCGG CGCCCCGATC GCCGCCGTGC TCGGGGCGGG CTGGCACGAA
CTGCTCGGCT CGCTGCACCG GATGCCGCTC GACAGCGGCC CGGTCAACAT CGCCCGCGAA
TCCTTCCTCG GCTCGGACCA GGGCTGGCAT CTGTTCGCCC ATCGCTGCGG CGGCCTGATC
ATCCTGGAAT TCGAAAAGGC GGAACCGGAA GCCGCAGGCA CGACGTCGAA CCTGTATTCC
GAAGTCCGTG CCGATCTCGC GGCACTTCAG GCCACGGAAG GCGTGCAGGC GTTCTTCGAT
CTGGCGGTCG AGCGGATCCG TTCCTTCACC GGCTACGACC GGGTGATGGC CTACCGCTTC
GCCGAGGACG GCAGCGGCCA GGTGATCGCC GAGGCGAGGC GGGATGATCT CGAACCGTAT
CTCGGGCTGC ATTATCCGGC GACCGACATT CCGGCGCCGG CACGGCGGCT GTTCGCGCTG
AGCTGGGTGC GGCACCTGCC GGATGTCGGC TACACGCCGG TGCCACTGCT GGCGGCGAAG
TCGCCGCTGG TGACCGGTCC GGTCGACATG AGCTTTGCGA GCCTGCGCAG CGTCTCGGTG
ATGTACACCG GGTACCTGAA GAACATGGGC GTGCAGTCGA CGCTGGTGAT GCCGCTGGTG
AAGGAAGGCC GGCTGTGGGG CCTGATCTCG GCGATGCACC ATGCCGCCCC TCGCCACATC
TCGCACCAGA TGCGGATGGC GGCGGAGTTT CTCGCCCATA CGCTGTCGCT GCTGATGTCG
GCGAAGGAAG ACGCCGAACA GTTCGAACGA AGCAGCGCCA GGAAGGCGGC CGCCGAGGCG
CTCACGCGCT TGCTCGACAG CGAGGCCGAC ATCGGTGCGG CACTCCACGC TGCCGGCGCA
CTCGATCTGC TGAGCGCGCT GATCGACGCC GGCGGCGTGG TCGTGCAGAC CGGCGACGAA
GTCGCGACGC GCGGCGAGGC GCCCGCGGCC GCGCCGCTGC ACGAGCTGAC GAGCTGGCTG
CGCGAACGCG CCCGGCCGGT GTTCGCCACT GATCGGCTGC CGAGCCTCGA TCCCGCCGCG
CAAGCCATCG CCAGCCAGGC CAGCGGTGTG CTGGCGCTGC GACCGCTGCC CGATCAGCCG
ATACTGATCG CCTGGCTACG GCCCGAGCAA ATCGAGGACG TGCAATGGGC CGGCGACCCG
CGCAAGCCGG TCGAGATCAG CGAGGCGGAC GGGATGCAGC GGCTCCGGCC GCGCAATTCC
TTCGCGTTGT GGAAGGAGAG CGTGCAGGGA CGCGCAGTGC CGTGGCGTGA CGACGAGAAG
GACGCCGCCA CGCAGCTGGC CGCAGCCATT GCCGAGATCG CCGCTGCCCG AAAGGGACGG
ATCGAGCGGA TCAACCGGGC GCTGGATGCG TCGCACTCGG AGCTCAGCCG CTACACCGAC
GTCGCCTCCG CCGAACTCAA GGAACATCTG CGCGGCATCC ACCATCTCAC CACCTCGCTG
CGCCGTCGCC AAGGCGAGGT GCTCGACGAG GAGGGCCGCC AGCAGGTCGC CACCATCCTG
AAATTGACGC AGCGGATGGA CGCGCTGGTC GATGCGCTGC TCGACCGCAG CCGAGGCGGC
AGCGAAGCTG CCTCCGAGAC GGTCGACCTC GATGCCGTGG TCGATGACGC CCTGGCGCCG
TTCGCGCGCC GGATCGCCGA AGACCGCATC GACGTACGCC GGCCGATGCG GCTCGGCACG
GCACAGGGCC ACCGCGAATG GATCGGCGAA GTGTTCACCA ATCTGATCGG CAATGCCATT
CGGTACAACG ACAAGCCGGA GCGCTGGATC GAAATTGGCG TCGAGGACGG TTCGCCGCCG
CGCTACTATG TGCGGGACAA CGGCATCGGC ATCGCCGATA CCGATCAGCA ACTGGTCTTC
CAGATGTTCC ATCGCGTCGA CCAATCGGAG CAGAAGGCTG AAGGCGCCGG CGTCGGTCTG
GCGATGACGC GCCGGATCGT GGCGCATCAC GGCGGCCGGA TCTGGGTGCA ATCCCGCCTC
GGCGACGGCG CGACGTTCTA TTTTACGCTC GCACCCGACG AGGAGCAGCA CGATGCGTAG
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| Protein sequence | MGEADSGGIV TARNVDLSSC DRELVQYPEA IQPHGAMLTV DEQSDRVLHA SANCAAFIGK
PPEAVIGAPI AAVLGAGWHE LLGSLHRMPL DSGPVNIARE SFLGSDQGWH LFAHRCGGLI
ILEFEKAEPE AAGTTSNLYS EVRADLAALQ ATEGVQAFFD LAVERIRSFT GYDRVMAYRF
AEDGSGQVIA EARRDDLEPY LGLHYPATDI PAPARRLFAL SWVRHLPDVG YTPVPLLAAK
SPLVTGPVDM SFASLRSVSV MYTGYLKNMG VQSTLVMPLV KEGRLWGLIS AMHHAAPRHI
SHQMRMAAEF LAHTLSLLMS AKEDAEQFER SSARKAAAEA LTRLLDSEAD IGAALHAAGA
LDLLSALIDA GGVVVQTGDE VATRGEAPAA APLHELTSWL RERARPVFAT DRLPSLDPAA
QAIASQASGV LALRPLPDQP ILIAWLRPEQ IEDVQWAGDP RKPVEISEAD GMQRLRPRNS
FALWKESVQG RAVPWRDDEK DAATQLAAAI AEIAAARKGR IERINRALDA SHSELSRYTD
VASAELKEHL RGIHHLTTSL RRRQGEVLDE EGRQQVATIL KLTQRMDALV DALLDRSRGG
SEAASETVDL DAVVDDALAP FARRIAEDRI DVRRPMRLGT AQGHREWIGE VFTNLIGNAI
RYNDKPERWI EIGVEDGSPP RYYVRDNGIG IADTDQQLVF QMFHRVDQSE QKAEGAGVGL
AMTRRIVAHH GGRIWVQSRL GDGATFYFTL APDEEQHDA
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