Gene Rpal_0121 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0121 
Symbol 
ID6407764 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp133382 
End bp133939 
Gene Length558 bp 
Protein Length185 aa 
Translation table11 
GC content61% 
IMG OID642710030 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_001989159 
Protein GI192288554 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGACAG TGACGTCCAC CGCAATCGAG GCGGTGAAGA TTATCACGCC GAGGGCATTC 
GCGGATTCGC GGGGAACGTT CTCCGAAACC TACAACAGGC AGCGCTTCGT CGATCACGGT 
GTTGCGCTCG AATTCGTCCA GGACAACCAA TCGATTTCGG CTGCAGTCGG CACCGTTCGC 
GGGCTGCACT TCCAGAGCGC GCCGTTTGCG CAGGACAAGC TGGTGCGAGT GGCGAAGGGC 
CGTATCCTCG ACGTTGCGGT CGATCTGCGC CGGTCCTCGC CGACCTACGG CCAATGGGTC 
GCCGAAGAGC TGTCTGCCGA GGACGGCAAG CAGTTGCTGA TTCCGATCGG TTTCGCCCAC 
GGCTTCTGCA CCCTCGAACC CGACACGGTG CTGGCCTACA AGGTGACCAA CTACTATTCG 
CCGCCGCATG ATCTCGGCAT CGCCTGGAAC GATCCCGATC TAGCGGTACG CTGGCCTGTC 
ACTGCCGATC AGGCGGTGCT GTCGGATAAG GATCTGAAGC TGCCGCCGTT CGCGTCACTG 
CCGAACTACT TCGAGTAG
 
Protein sequence
MLTVTSTAIE AVKIITPRAF ADSRGTFSET YNRQRFVDHG VALEFVQDNQ SISAAVGTVR 
GLHFQSAPFA QDKLVRVAKG RILDVAVDLR RSSPTYGQWV AEELSAEDGK QLLIPIGFAH 
GFCTLEPDTV LAYKVTNYYS PPHDLGIAWN DPDLAVRWPV TADQAVLSDK DLKLPPFASL 
PNYFE