Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0108 |
Symbol | |
ID | 6407751 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 117927 |
End bp | 119570 |
Gene Length | 1644 bp |
Protein Length | 547 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642710017 |
Product | Amidohydrolase 3 |
Protein accession | YP_001989146 |
Protein GI | 192288541 |
COG category | [R] General function prediction only |
COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.134206 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACGTCCG AAACCGTCGT TTATTCCGCC CGCAAAATTA TCACCATGAA TCCGTCGCGG CCGAGTGCGA CGCATGTTGC GGTGCGGGAC GGGCGGATCG TTGCGACCGG CAGCGCCGAC GAACTGATGG TAACCGGCGC CCGGCTCGAT ACTCGCTTCG CCGACAAGGT GCTGATGCCC GGTTTCGTCG AAGGCCACAG CCACATCATG GAAGGCCTGA TGTGGAAGCA GCCCTATGTG GGCGCGTTCG ACCGCCGTTC GCCGGAAGGC AAAGTAGTCG CCGGTGTGCC GGACATCGAG GCGATCGTGG CGCGGCTGCA GCAGGCCGAG GCCGCGATGC CGGACGACGG TTCCCCGCTT TACGCTTGGG GCTTCGATCC GCTGCATATC GGCGGCACGA TGCTGACCCG GCAGGATCTC GACAAGGTGT CGACCAAGCG TCCAGTCCTC GTCGTCCACG CCTCGTTCCA CATCAACAAC GTCAACACGC TGACGCTTGA GCGCGCCGAG CTGCTGCATG CCACCAACAT CTCGGGTGTC GTCGCCGGCG CCGACGGCTT GGCGAGCGGC GAGCTGCAGG GCATTCCGGC GCGGATGCGG CTGTTCCGTG CGCTCGGCCA CAATCCGCTC GCTGGTACCA TCACCGAGGC GGACGTGCGG CGCTATGCGG CGTCGTGCTG CGTGCAGGGC GTCACCACGA TTACCGACCT GCATAACGAT CTCGCCGATC CGACCATCGA GGTCTATCGC GCCGCGACCA GCCAGGCCGA TTTCGGCGTT CGCTTGGTGC CGGCGCTGGC CGCGGTGTCG CACACGCCCG AACAGGCGAT CGCCAAGTTG GAAACGCTGC GCGGCCACGC CAGCGACAAG CTGCATTATG GCATCGTCAA GCTGGTGGTC GATGGCTCGA TCCAGGGCTT CACCGCACGG CTGCGCTGGC CCGGCTATCA CAACGGTGCC GCCAACGGCC TGTGGTACAT CGCGCCCGAA GAGCTGCCGC GACTGGTCGA AGCGTATCAC CGCGCCGGCG TGCAGCTTCA CATTCACACC AACGGCGACG AGGCCACCGA AGTGGCGCTC GATGCGATCG AGGCGGCACA GACCGTCGCG CCTCGTCCCG ATCATCGCCA CACCTTGCAG CACTGCCAGA TGGCCAGCGC CGCGCAGTTC CGGCGGATGA AGAACCTTGG CGTTTGCGCC AATCTGTTCG CCAACCACCT GTACTACTGG GGCGACGCGC ACTACGAGCT GACGATGGGG CCGGAGCGGG CGGCACGGCT CGACGCGACC GGGACCGCAC AGCGGATCGG GGTGCCGTTC GCGATCCACT CCGACGCGCC GGTGACACCG CTGGCGCCGC TGTTCACCGC ATGGTGTGCG GTCAATCGCG TGTCGTCGAG CGGGCGTGTG CTGGGCCGGG ATACCGAAGC GCTCACGACC GAGCAGGCGC TTGCTGCAAT CACCATCGGC GCAGCCTATA CTTTGAAGAT GGATCATCTG GTCGGCAGCA TTGAGACCGG CAAGTATGCC GACTTCGTCG TGCTCGATGA GGATCCGCTG GCCGTTCCGC CGGAGCGGCT CAAGGAGATC GCGGTCTGGG GCACCGTGGT CGGCGGCATG ATCAAGGAGG CGCCCCGCGC ATGA
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Protein sequence | MTSETVVYSA RKIITMNPSR PSATHVAVRD GRIVATGSAD ELMVTGARLD TRFADKVLMP GFVEGHSHIM EGLMWKQPYV GAFDRRSPEG KVVAGVPDIE AIVARLQQAE AAMPDDGSPL YAWGFDPLHI GGTMLTRQDL DKVSTKRPVL VVHASFHINN VNTLTLERAE LLHATNISGV VAGADGLASG ELQGIPARMR LFRALGHNPL AGTITEADVR RYAASCCVQG VTTITDLHND LADPTIEVYR AATSQADFGV RLVPALAAVS HTPEQAIAKL ETLRGHASDK LHYGIVKLVV DGSIQGFTAR LRWPGYHNGA ANGLWYIAPE ELPRLVEAYH RAGVQLHIHT NGDEATEVAL DAIEAAQTVA PRPDHRHTLQ HCQMASAAQF RRMKNLGVCA NLFANHLYYW GDAHYELTMG PERAARLDAT GTAQRIGVPF AIHSDAPVTP LAPLFTAWCA VNRVSSSGRV LGRDTEALTT EQALAAITIG AAYTLKMDHL VGSIETGKYA DFVVLDEDPL AVPPERLKEI AVWGTVVGGM IKEAPRA
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