Gene Rpal_0108 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0108 
Symbol 
ID6407751 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp117927 
End bp119570 
Gene Length1644 bp 
Protein Length547 aa 
Translation table11 
GC content66% 
IMG OID642710017 
ProductAmidohydrolase 3 
Protein accessionYP_001989146 
Protein GI192288541 
COG category[R] General function prediction only 
COG ID[COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.134206 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACGTCCG AAACCGTCGT TTATTCCGCC CGCAAAATTA TCACCATGAA TCCGTCGCGG 
CCGAGTGCGA CGCATGTTGC GGTGCGGGAC GGGCGGATCG TTGCGACCGG CAGCGCCGAC
GAACTGATGG TAACCGGCGC CCGGCTCGAT ACTCGCTTCG CCGACAAGGT GCTGATGCCC
GGTTTCGTCG AAGGCCACAG CCACATCATG GAAGGCCTGA TGTGGAAGCA GCCCTATGTG
GGCGCGTTCG ACCGCCGTTC GCCGGAAGGC AAAGTAGTCG CCGGTGTGCC GGACATCGAG
GCGATCGTGG CGCGGCTGCA GCAGGCCGAG GCCGCGATGC CGGACGACGG TTCCCCGCTT
TACGCTTGGG GCTTCGATCC GCTGCATATC GGCGGCACGA TGCTGACCCG GCAGGATCTC
GACAAGGTGT CGACCAAGCG TCCAGTCCTC GTCGTCCACG CCTCGTTCCA CATCAACAAC
GTCAACACGC TGACGCTTGA GCGCGCCGAG CTGCTGCATG CCACCAACAT CTCGGGTGTC
GTCGCCGGCG CCGACGGCTT GGCGAGCGGC GAGCTGCAGG GCATTCCGGC GCGGATGCGG
CTGTTCCGTG CGCTCGGCCA CAATCCGCTC GCTGGTACCA TCACCGAGGC GGACGTGCGG
CGCTATGCGG CGTCGTGCTG CGTGCAGGGC GTCACCACGA TTACCGACCT GCATAACGAT
CTCGCCGATC CGACCATCGA GGTCTATCGC GCCGCGACCA GCCAGGCCGA TTTCGGCGTT
CGCTTGGTGC CGGCGCTGGC CGCGGTGTCG CACACGCCCG AACAGGCGAT CGCCAAGTTG
GAAACGCTGC GCGGCCACGC CAGCGACAAG CTGCATTATG GCATCGTCAA GCTGGTGGTC
GATGGCTCGA TCCAGGGCTT CACCGCACGG CTGCGCTGGC CCGGCTATCA CAACGGTGCC
GCCAACGGCC TGTGGTACAT CGCGCCCGAA GAGCTGCCGC GACTGGTCGA AGCGTATCAC
CGCGCCGGCG TGCAGCTTCA CATTCACACC AACGGCGACG AGGCCACCGA AGTGGCGCTC
GATGCGATCG AGGCGGCACA GACCGTCGCG CCTCGTCCCG ATCATCGCCA CACCTTGCAG
CACTGCCAGA TGGCCAGCGC CGCGCAGTTC CGGCGGATGA AGAACCTTGG CGTTTGCGCC
AATCTGTTCG CCAACCACCT GTACTACTGG GGCGACGCGC ACTACGAGCT GACGATGGGG
CCGGAGCGGG CGGCACGGCT CGACGCGACC GGGACCGCAC AGCGGATCGG GGTGCCGTTC
GCGATCCACT CCGACGCGCC GGTGACACCG CTGGCGCCGC TGTTCACCGC ATGGTGTGCG
GTCAATCGCG TGTCGTCGAG CGGGCGTGTG CTGGGCCGGG ATACCGAAGC GCTCACGACC
GAGCAGGCGC TTGCTGCAAT CACCATCGGC GCAGCCTATA CTTTGAAGAT GGATCATCTG
GTCGGCAGCA TTGAGACCGG CAAGTATGCC GACTTCGTCG TGCTCGATGA GGATCCGCTG
GCCGTTCCGC CGGAGCGGCT CAAGGAGATC GCGGTCTGGG GCACCGTGGT CGGCGGCATG
ATCAAGGAGG CGCCCCGCGC ATGA
 
Protein sequence
MTSETVVYSA RKIITMNPSR PSATHVAVRD GRIVATGSAD ELMVTGARLD TRFADKVLMP 
GFVEGHSHIM EGLMWKQPYV GAFDRRSPEG KVVAGVPDIE AIVARLQQAE AAMPDDGSPL
YAWGFDPLHI GGTMLTRQDL DKVSTKRPVL VVHASFHINN VNTLTLERAE LLHATNISGV
VAGADGLASG ELQGIPARMR LFRALGHNPL AGTITEADVR RYAASCCVQG VTTITDLHND
LADPTIEVYR AATSQADFGV RLVPALAAVS HTPEQAIAKL ETLRGHASDK LHYGIVKLVV
DGSIQGFTAR LRWPGYHNGA ANGLWYIAPE ELPRLVEAYH RAGVQLHIHT NGDEATEVAL
DAIEAAQTVA PRPDHRHTLQ HCQMASAAQF RRMKNLGVCA NLFANHLYYW GDAHYELTMG
PERAARLDAT GTAQRIGVPF AIHSDAPVTP LAPLFTAWCA VNRVSSSGRV LGRDTEALTT
EQALAAITIG AAYTLKMDHL VGSIETGKYA DFVVLDEDPL AVPPERLKEI AVWGTVVGGM
IKEAPRA