Gene Rpal_0102 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0102 
Symbol 
ID6407745 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp111313 
End bp112371 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content68% 
IMG OID642710011 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_001989140 
Protein GI192288535 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGATCC ATGAAGATCT GCGCCCGGCC GACGGCGATC CGTATCTGCT CGACGTCAAC 
GACCTCGTGG TGCACTTCCG CACCGGCCGT AAGCGGCCGT GGGGTAAACC GTCTTTCGTT
CATGCGGTCG ACGGCGTCAG CTTCCGCGTC AAGCGGGGCA CCACCTTCGG CATCGTCGGC
GAAAGCGGCT CGGGCAAATC GACCACCGCG CAGGCGATCA TGCGGCTGGT GCAGGCGACC
TCAGGGCAGG TGGTGTTTCG CGGCGAAGAC ATCATGCCGC TCACCGGCGA GCCGCTGCGC
AAGGCGCGGA AGCACCTGCA GATCGTGTTT CAGGACCCGT TCTCGGCGCT CGATCCGCGC
CGCCGCGCCG GCGACCAGAT CCGCGAGCCG CTCGATCTGC TCGAGATCGG CAGCCGCAGC
GAACGCGACG CCCGGGTGCG CAAGCTGCTC GCCGAGGTCG GCCTGCCGCC GGAGGCGGCC
GATCTGTTTC CGCATCAGTT TTCGGGCGGC CAGCGGCAGC GGCTGTGCAT CGCGCGCGCA
CTGGCGCCGG AGCCCGAGCT GATCGTCTGC GACGAGGCGG TGTCGGCGCT GGACGTTGCG
ATCCAGGCGC AGATCCTTAA CCTTCTGAAG AAACTGCAGC GCGAGCGCGG CCTTACCTAC
ATCTTCATCT CGCACGATCT CGGCGTCATC CAGCAGTTCT GCGACGAGAT CGCCGTGATG
TATCTCGGCA AGATCGCCGA ACAGGCGCCG GCCTCGGCGC TGTTCACCGC GCCGCGTCAT
CCTTACACAT GGTCGCTGGT GTCGGCCGCC GTGCCGCCCG GTCCGCTGCG TGACGAGCTG
AAGGCCAAGT ATCTGGTTAA GGGCGAGCCG CCGTCGCCGG TCGATCCGCC GCCCGGCTGC
CGCTTCGCGC AACGCTGCCC GTTTGCCGAG GCGCGCTGCC GGGCAGAGTT GCCCTTTCTC
GACGCCGCCG GCCACGAACA CTACGTCGCC TGCCATCGCA AGGATGAGAT CGGTGTCCCC
GATTTCGCGC CGCGCGTGGC GAGTGGGCCG ATCGGTTAG
 
Protein sequence
MMIHEDLRPA DGDPYLLDVN DLVVHFRTGR KRPWGKPSFV HAVDGVSFRV KRGTTFGIVG 
ESGSGKSTTA QAIMRLVQAT SGQVVFRGED IMPLTGEPLR KARKHLQIVF QDPFSALDPR
RRAGDQIREP LDLLEIGSRS ERDARVRKLL AEVGLPPEAA DLFPHQFSGG QRQRLCIARA
LAPEPELIVC DEAVSALDVA IQAQILNLLK KLQRERGLTY IFISHDLGVI QQFCDEIAVM
YLGKIAEQAP ASALFTAPRH PYTWSLVSAA VPPGPLRDEL KAKYLVKGEP PSPVDPPPGC
RFAQRCPFAE ARCRAELPFL DAAGHEHYVA CHRKDEIGVP DFAPRVASGP IG