| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0100 |
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| Symbol | |
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| ID | 6407743 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 107472 |
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| End bp | 110621 |
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| Gene Length | 3150 bp |
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| Protein Length | 1049 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642710009 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | YP_001989138 |
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| Protein GI | 192288533 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGCCG ATACCTTCAT CGACCGGCCA CGGCTCGCCG CGGTCATCGC GCTGGTGACC
ACGCTGGTCG GCGCCCTGGC GCTGCTGCGC ATTCCGGTGG CCCAGCTCCC GGACATCGTC
CCGCCGCAGG TCCGGGTGTC GACGACCTAT CCCGGCGCTT CCGCCGAGGT GCTGGAATCA
ACCGTGGCGC AGCCGATCGA GGCCAAGGTC GTCGGCGTCG ACAAAATGAT CTACATGAAG
AGTTCGAGCG GCAACGACGG CTCCTATACG CTCGACGTCT CGTTCGCGCT CGGCACCAAC
CCCGACATCA ACACCGTCAA CGTCAACAAC CGCGTGCAGA ATGCGCTGTC GCAGCTTCCG
TCCGAGGTAC GGCTGCAGGG CGTGACCGTG CAGAAGCGCT CGTCGTCGAT GCTGCAGGTC
ATCAACATGT CCAGCACGGG GCAGAAATAC GACCAGCTGT TCCTGACCAA TTATGGCCTG
ATCAACGTGC TGGACGAACT GGCCCGTGTG CCCGGCGTCG GTGAGGCGGC GCTATTCGGC
CGCTATGCCT ATTCGATGCG GATCTGGTTC GACATCGAAA AGCTATCGAG CCTGGGCCTG
GTGCCGTCCG ACGTCGTCGC CGCGATCAGC GCCCAGAACG TGCAGGCGCC GGTCGGGCGG
ATCGGCGCGC GCCCGGTGCC CGACGACCAG AAATTCCAGT TCAACCTGCA GACCCAGGGC
CGGCTGACCA AGCCGGAGGA GTTCGGCGCC ATCGTGCTGC GCGCCAACGC CGACGGTTCG
GTGTTGAAGG TCTCCGACGT CGCCCGCGTC GAGCTCGGTG CGCAAAACGC CGATACCTAT
GCGCGGCTGA ACGGCGATCC GACCATCGGC ATCGGCATCT TCCTCGCGCC CGGCGCCAAC
GCCATCAACA CCGCCGCCGC GATCAATGCC AAGCTCGACA CGCTGCGGCC GCGTTTTCCG
GAGAGCGTGC AGGCACGCGT GGTCTACGAC GCCACCGTGT TCGTCAACGA CACCATCAGC
GCCGTGCTGC ACACCCTGTT CGAAGCCTTC GCGCTGGTCG CCGTGGTCGT GTTCCTGTTT
CTCGGCAATC TCCGCGCCAC GCTGATCCCG ATCATCGCGG TGCCGGTCAG CCTGATCGGC
ACCTTCGCGG TGCTGATCGC GTTCGGCACC TCGGTCAACA CCGTGTCGAT GCTGGCGCTG
GTGCTGGCGA TCGGCATCGT CGTCGACGAC GCCATCGTCG TGGTCGAGAA CGTCGAGCGG
GTCATGGAAG AAGAGCCGGA GCTGTCGCCG GCCGACGCCA CCAAGAAGGC GATGGCACAG
GTCACCGCGC CGATCATCGC CATCACGCTG GTGCTGCTGT CGGTATTCGT GCCGATCGGC
TTCCTGCCCG GCATCATGGG CGAATTGTTC CGGCAGTTCG CGGTGACGAT CTCGGCCGCG
ATGCTGATCT CGGCGGTCAA CGCGCTGACG CTGTCGCCGG CGATGTGCGC GCTGTTCCTG
CGCCACGAAG GGCAACGCCG CGGCTTCATG CAGAAGGTCG GCCGCGGCAT CGACCGCGCG
CGGGACGGCT ACACCTCGAC GGTGCGGATC GCGCTGCGCC GGCCGGCGCT GTCGGTGCTG
GCGGTGGCGG CCTGCGGCGC CGGCATCTGG GGGCTGTCGC TGACGACGCC GAGCGGGTTT
CTTCCCGAAG AGGATCAGGG CGCCTTCTTC ATCAACGTGC AGCTCCCCGA CGGCGCTTCG
GTGGCGCGCA CCGAGGCGAC GGTGATCGAG GTGGAAAAGA TCGTCAAGCA GATGCCGGAA
GTGCGCGACG TGCTGTCGAT CGTCGGGCTG TCGCTGCTCG ACAACTACTC GGCCTCCAAC
AACGCCTTCA TGATCGTGCA GCTCAAGCCG TTCGCCGATC GCAAGGCCGC GTCGTCGTCG
GCGCAGACGC TGATCGGCAA GACTTTCGGC GCGACCCAGG CGGTGCGCAC CGCGACCGTG
CTGCCGTTCA ACCTGCCGCC GGTCGTCGGC CTGTCCACTG CCGGCGGTTT CCAGTATCAG
CTCGAATCGC TGGAAGGCGC CGAGCCGGCG GCGATCGCCG GCGTGACCAA CGGGCTGGTC
GCCGCCGGCA ACCAGAACCC GCTGCTCACC CGGGTGTTCT CGACCTACAA CGCCAATGCG
CCGTCGCTGT ATCTCGACAT CGACCGCGAG AAAGCGCAGT CGCTCGGCAT CACCATCAAC
GACATCTTCT CGGCGCTGCA GATCTCGCTC GGCGGGCTCT ACATCAACAA CTTCAACCTG
TTCGGACGGA CCTGGCAGGT CAACCTGCAG GGCGACGCGA GCGCGCGGCG TGACCTCCCC
AACCTGTGGG ACATCTACGT CCGCAACACC AAGGGCGCGA TGGTGCCGCT GCAATCGATC
GCAACCGTCC GCACCGTCAC CGGCCCGGCG GTGATCACCC GCTACAACAA TTATCGTTCG
GTGACGATCA ACGGCTCCCC CGCACCCGGC GTCTCCTCGG GCACCGCGAT GGCCGCGATG
GCCGAGGTGT CGGCCAAGAC GCTGCCGCCC GGCTACGCGT TCGAATGGAC CGGCACCGCC
TATCAGGAGC ACGAGGCGGT CGGCAAGACC GGCTACATCC TGGCGCTCGC GGTGATCTTC
GCATACCTGT TCCTGGTGGC GCTGTACGAA AGCTGGGTGA TCCCGGTGCC GGTGCTGCTG
TCGGTGTCGA TCGCGGTGCT CGGCGCCTTC GCCGGCATCC TGGTCGGCCG CGTCACCCTC
GATCTCTACG CCCAGATCGG CCTTGTGGTG TTGATCGCCC TCGCCGCCAA GAACGGCATC
CTGATCGTCG AATTCGCCAA GGAGCAGCGC GAGGCCGGGC TGTCGATCAA GGCTGCGGCC
GAGATGGGAG CCAAGCTGCG CTTTCGCGCC GTGATGATGA CCTCGATCGC CTTCATCCTC
GGCCTGGTGC CGCTGGTGTG GGCCGACGGC GCGGCGATGC TGGCGCGGCG CAATCTGTCG
ACGCCGGTGT TCGCCGGGAT GCTGACCGCC AGCCTGATCG GCATCATCCT GATTCCGATG
CTGTACGTGG TGTTCCAGTC GCTGCGCGAG AAAGTCGCCG AGCCGGGCGT GCTGACGCCG
CTGTCGCTGA AACGTCTGCT GAAGCGATGA
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| Protein sequence | MIADTFIDRP RLAAVIALVT TLVGALALLR IPVAQLPDIV PPQVRVSTTY PGASAEVLES
TVAQPIEAKV VGVDKMIYMK SSSGNDGSYT LDVSFALGTN PDINTVNVNN RVQNALSQLP
SEVRLQGVTV QKRSSSMLQV INMSSTGQKY DQLFLTNYGL INVLDELARV PGVGEAALFG
RYAYSMRIWF DIEKLSSLGL VPSDVVAAIS AQNVQAPVGR IGARPVPDDQ KFQFNLQTQG
RLTKPEEFGA IVLRANADGS VLKVSDVARV ELGAQNADTY ARLNGDPTIG IGIFLAPGAN
AINTAAAINA KLDTLRPRFP ESVQARVVYD ATVFVNDTIS AVLHTLFEAF ALVAVVVFLF
LGNLRATLIP IIAVPVSLIG TFAVLIAFGT SVNTVSMLAL VLAIGIVVDD AIVVVENVER
VMEEEPELSP ADATKKAMAQ VTAPIIAITL VLLSVFVPIG FLPGIMGELF RQFAVTISAA
MLISAVNALT LSPAMCALFL RHEGQRRGFM QKVGRGIDRA RDGYTSTVRI ALRRPALSVL
AVAACGAGIW GLSLTTPSGF LPEEDQGAFF INVQLPDGAS VARTEATVIE VEKIVKQMPE
VRDVLSIVGL SLLDNYSASN NAFMIVQLKP FADRKAASSS AQTLIGKTFG ATQAVRTATV
LPFNLPPVVG LSTAGGFQYQ LESLEGAEPA AIAGVTNGLV AAGNQNPLLT RVFSTYNANA
PSLYLDIDRE KAQSLGITIN DIFSALQISL GGLYINNFNL FGRTWQVNLQ GDASARRDLP
NLWDIYVRNT KGAMVPLQSI ATVRTVTGPA VITRYNNYRS VTINGSPAPG VSSGTAMAAM
AEVSAKTLPP GYAFEWTGTA YQEHEAVGKT GYILALAVIF AYLFLVALYE SWVIPVPVLL
SVSIAVLGAF AGILVGRVTL DLYAQIGLVV LIALAAKNGI LIVEFAKEQR EAGLSIKAAA
EMGAKLRFRA VMMTSIAFIL GLVPLVWADG AAMLARRNLS TPVFAGMLTA SLIGIILIPM
LYVVFQSLRE KVAEPGVLTP LSLKRLLKR
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