| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0090 |
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| Symbol | |
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| ID | 6407733 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 100114 |
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| End bp | 101802 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642709999 |
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| Product | protein of unknown function DUF894 DitE |
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| Protein accession | YP_001989128 |
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| Protein GI | 192288523 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.735299 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGGCA CGGCGAAGCG CGGGCTGTTT TCCGGCGACG GGATCGCGGC GCCGCTGCGG
CACGCACTAT TCCGGCGGAT CTGGCTGGCA AGCCTGCTGT CCAACCTCGG CCTGATGATC
AACGGCGTCG GCGCCGCCTG GGCGATGACG CAGATGACCG CGTCCGCCGA CAAGGTGGCG
CTGGTGCAGA CCGCCCTGAT GCTGCCGATC ATGCTGGTGG CGATGCCGGC GGGCGCGATC
GCCGACATGT ACGACCGCCG CCTGGTGGCG CTGGCCGCGC TCGGCATCGG CCTCGCCGGC
GCGACGACGC TGGCGGCGCT GGCGCATCTC GGGCTGGTGA CACCCAACAC CCTGCTGCTG
TTCTGCTTCG TGATCGGCAC CGGCATGGCG CTGTTCGGAC CGTCCTGGCA GGCCTCGGTG
TCCGAGCAAG TGCCGGCCGA AACCCTGCCG GCCGCAGTGG CGCTGAACGG CATCAGCTAC
AACATCGCGC GCAGCTTCGG CCCGGCGGTC GGCGGCATCG TGGTGGCGGC TGCCGGCGCG
GTGGCGGCGT TCGCCGCCAA TGCGGTGCTG TATCTGCCGC TATTGATCGT GCTGCTGCTG
TGGCGGCGGG ACAGCGAGCC ACCGCGGCTA CCGCCAGAGC GGCTGAACCG CGCGATCGTC
TCCGGCGTGC GCTATATCAC CAACTCGCCG GCAATCCGCA TTGTGCTAAC CCGCACGCTG
GTGACCGGCA TCGCTGGCTC TTCGGTGCTG GCCCTGATGC CTCTGGTGGC ACGCGACCTG
TTGCACAGCG GCGCCGAGAC CTACGGGCTG CTGCTCGGCG CATTCGGCAT CGGCGCGGTG
ATCGGCGCAC TCAATGTCGG GATTGCGCGG CAGCGCTTGA GCAGTGAAGC CGCGGTTCGG
CTGTGTGCGA TGATCATGGG CGTGGCAATG GCGGTGATCG CGATCAGCCG CTCGCCACTC
CTCACCGCAG CAGCCCTCGT CGTCGCCGGC GCGGTGTGGA TGCTGGCGAT CGCGCTGTTC
AACATCGGCG TGCAACTGTC GGCGCCGCGC TGGGTGGCGG GACGTTCGCT TGCGGCATTC
CAGGCGTCGA TCTCCGGCGG CATCGCGATC GGCAGCTGGG GCTGGGGCCA CGTTGCTGAT
CTGTCCGGCG TCGCGCCATC GATGCTGCTG TCGGGGCTGG CGATGCTGGC TTCTCCAGTG
CTCGCCTTCC TGCTGCCGAT GCCGCCGGTC GGCACCCGCA CCGAGGACGC CGAACTGCTG
GCCGATCCGG AATTGAAACT GGCGCTGACG TCGCGCAGCG GTCCGGTGGT GATCGAAATC
GAGTACCGGA TCGACGCCGA CGAAGCGCGC GCGTTTCACA ACGTGATGCA GGAGGTGCAG
CTCAGTCGCC AGCGCAACGG CGCCTATGGC TGGTCGATCG CCCGCGACGT CGCCGATCCC
GAATTATGGA CCGAGCGCTA TCACTGCCCG ACCTGGCTCG ATTATCTGCG CCAGCGCAGC
CGTTCGACCC AGGACGACCG CGCATTGCAC CGGCGCGCGA TCGCGTTTCA TCGTGGACCG
GAGCCGGTGC GGGTGCGCCG CATGCTGGAG CGGCCGTTCG GCTCGGTGCG CTGGAAAGAG
GAATCGCCCG ATCGCACTAC CGCGACCGAA GTGCTGCCGG TCGCCGGCGT CAGCGGCGGT
TCGACATAG
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| Protein sequence | MAGTAKRGLF SGDGIAAPLR HALFRRIWLA SLLSNLGLMI NGVGAAWAMT QMTASADKVA
LVQTALMLPI MLVAMPAGAI ADMYDRRLVA LAALGIGLAG ATTLAALAHL GLVTPNTLLL
FCFVIGTGMA LFGPSWQASV SEQVPAETLP AAVALNGISY NIARSFGPAV GGIVVAAAGA
VAAFAANAVL YLPLLIVLLL WRRDSEPPRL PPERLNRAIV SGVRYITNSP AIRIVLTRTL
VTGIAGSSVL ALMPLVARDL LHSGAETYGL LLGAFGIGAV IGALNVGIAR QRLSSEAAVR
LCAMIMGVAM AVIAISRSPL LTAAALVVAG AVWMLAIALF NIGVQLSAPR WVAGRSLAAF
QASISGGIAI GSWGWGHVAD LSGVAPSMLL SGLAMLASPV LAFLLPMPPV GTRTEDAELL
ADPELKLALT SRSGPVVIEI EYRIDADEAR AFHNVMQEVQ LSRQRNGAYG WSIARDVADP
ELWTERYHCP TWLDYLRQRS RSTQDDRALH RRAIAFHRGP EPVRVRRMLE RPFGSVRWKE
ESPDRTTATE VLPVAGVSGG ST
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