Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0090 |
Symbol | |
ID | 6407733 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 100114 |
End bp | 101802 |
Gene Length | 1689 bp |
Protein Length | 562 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 642709999 |
Product | protein of unknown function DUF894 DitE |
Protein accession | YP_001989128 |
Protein GI | 192288523 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.735299 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGGGCA CGGCGAAGCG CGGGCTGTTT TCCGGCGACG GGATCGCGGC GCCGCTGCGG CACGCACTAT TCCGGCGGAT CTGGCTGGCA AGCCTGCTGT CCAACCTCGG CCTGATGATC AACGGCGTCG GCGCCGCCTG GGCGATGACG CAGATGACCG CGTCCGCCGA CAAGGTGGCG CTGGTGCAGA CCGCCCTGAT GCTGCCGATC ATGCTGGTGG CGATGCCGGC GGGCGCGATC GCCGACATGT ACGACCGCCG CCTGGTGGCG CTGGCCGCGC TCGGCATCGG CCTCGCCGGC GCGACGACGC TGGCGGCGCT GGCGCATCTC GGGCTGGTGA CACCCAACAC CCTGCTGCTG TTCTGCTTCG TGATCGGCAC CGGCATGGCG CTGTTCGGAC CGTCCTGGCA GGCCTCGGTG TCCGAGCAAG TGCCGGCCGA AACCCTGCCG GCCGCAGTGG CGCTGAACGG CATCAGCTAC AACATCGCGC GCAGCTTCGG CCCGGCGGTC GGCGGCATCG TGGTGGCGGC TGCCGGCGCG GTGGCGGCGT TCGCCGCCAA TGCGGTGCTG TATCTGCCGC TATTGATCGT GCTGCTGCTG TGGCGGCGGG ACAGCGAGCC ACCGCGGCTA CCGCCAGAGC GGCTGAACCG CGCGATCGTC TCCGGCGTGC GCTATATCAC CAACTCGCCG GCAATCCGCA TTGTGCTAAC CCGCACGCTG GTGACCGGCA TCGCTGGCTC TTCGGTGCTG GCCCTGATGC CTCTGGTGGC ACGCGACCTG TTGCACAGCG GCGCCGAGAC CTACGGGCTG CTGCTCGGCG CATTCGGCAT CGGCGCGGTG ATCGGCGCAC TCAATGTCGG GATTGCGCGG CAGCGCTTGA GCAGTGAAGC CGCGGTTCGG CTGTGTGCGA TGATCATGGG CGTGGCAATG GCGGTGATCG CGATCAGCCG CTCGCCACTC CTCACCGCAG CAGCCCTCGT CGTCGCCGGC GCGGTGTGGA TGCTGGCGAT CGCGCTGTTC AACATCGGCG TGCAACTGTC GGCGCCGCGC TGGGTGGCGG GACGTTCGCT TGCGGCATTC CAGGCGTCGA TCTCCGGCGG CATCGCGATC GGCAGCTGGG GCTGGGGCCA CGTTGCTGAT CTGTCCGGCG TCGCGCCATC GATGCTGCTG TCGGGGCTGG CGATGCTGGC TTCTCCAGTG CTCGCCTTCC TGCTGCCGAT GCCGCCGGTC GGCACCCGCA CCGAGGACGC CGAACTGCTG GCCGATCCGG AATTGAAACT GGCGCTGACG TCGCGCAGCG GTCCGGTGGT GATCGAAATC GAGTACCGGA TCGACGCCGA CGAAGCGCGC GCGTTTCACA ACGTGATGCA GGAGGTGCAG CTCAGTCGCC AGCGCAACGG CGCCTATGGC TGGTCGATCG CCCGCGACGT CGCCGATCCC GAATTATGGA CCGAGCGCTA TCACTGCCCG ACCTGGCTCG ATTATCTGCG CCAGCGCAGC CGTTCGACCC AGGACGACCG CGCATTGCAC CGGCGCGCGA TCGCGTTTCA TCGTGGACCG GAGCCGGTGC GGGTGCGCCG CATGCTGGAG CGGCCGTTCG GCTCGGTGCG CTGGAAAGAG GAATCGCCCG ATCGCACTAC CGCGACCGAA GTGCTGCCGG TCGCCGGCGT CAGCGGCGGT TCGACATAG
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Protein sequence | MAGTAKRGLF SGDGIAAPLR HALFRRIWLA SLLSNLGLMI NGVGAAWAMT QMTASADKVA LVQTALMLPI MLVAMPAGAI ADMYDRRLVA LAALGIGLAG ATTLAALAHL GLVTPNTLLL FCFVIGTGMA LFGPSWQASV SEQVPAETLP AAVALNGISY NIARSFGPAV GGIVVAAAGA VAAFAANAVL YLPLLIVLLL WRRDSEPPRL PPERLNRAIV SGVRYITNSP AIRIVLTRTL VTGIAGSSVL ALMPLVARDL LHSGAETYGL LLGAFGIGAV IGALNVGIAR QRLSSEAAVR LCAMIMGVAM AVIAISRSPL LTAAALVVAG AVWMLAIALF NIGVQLSAPR WVAGRSLAAF QASISGGIAI GSWGWGHVAD LSGVAPSMLL SGLAMLASPV LAFLLPMPPV GTRTEDAELL ADPELKLALT SRSGPVVIEI EYRIDADEAR AFHNVMQEVQ LSRQRNGAYG WSIARDVADP ELWTERYHCP TWLDYLRQRS RSTQDDRALH RRAIAFHRGP EPVRVRRMLE RPFGSVRWKE ESPDRTTATE VLPVAGVSGG ST
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