| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0072 |
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| Symbol | |
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| ID | 6407715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 74866 |
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| End bp | 76080 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642709981 |
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| Product | tryptophan synthase subunit beta |
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| Protein accession | YP_001989110 |
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| Protein GI | 192288505 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0133] Tryptophan synthase beta chain |
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| TIGRFAM ID | [TIGR00263] tryptophan synthase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00296113 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCAAG CTTTGCCGAA TTCCTTCCGG TCCGGCCCCG ACGAGCGCGG GCATTTCGGT
ATCTATGGCG GCCGCTTCGT CGCCGAGACG CTGATGCCGC TGATCCTCGA TCTGGAAAAG
GCCTATGCGG AAGCCAAGGC CGACCCGGCG TTCCGCGCCG AGATGGACAA CCATCTCAAG
CACTATGTCG GACGTCCGTC GGCTTTGTAT TTCGCCGAGC GGCTGACCGA GCATTTCGGC
GGCGCCAAGA TCTACTTCAA GCGCGAAGAT CTCAATCACA CCGGCGCTCA CAAGGTGAAC
AACGTGCTCG GCCAGATCAT GCTGGCCAAG CGCATGGGCA AGCCGCGGGT GATCGCCGAG
ACCGGCGCCG GCATGCACGG CGTCGCCACC GCGACGATGT GCGCCAAATT CGGCCTCGAA
TGCGTGGTGT TCATGGGCGC GGTCGACGTC GAACGCCAGC AGCCCAACGT GCTGCGGATG
AAGGCGCTCG GCGCAGAAGT CCGCCCCGTC ACCTCCGGCG CCAACACGCT GAAGGACGCG
ATGAACGAGG CGCTGCGTGA CTGGGTCACC AACGTCCACG ACACGTTCTA TTGCATCGGC
ACGGTCGCGG GTCCGCATCC CTATCCGATG ATGGTGCGCG ACTTCCAGGC GGTGATCGGT
CAGGAAGTCC GCGAGCAGAT CATGCAGGCC GAAGGTCGCC TGCCCGACTC GCTGGTCGCC
TGCATCGGCG GCGGCTCCAA CGCGATGGGG CTGTTCCATC CGTTCCTCGA CGATCCGGGC
GTCGCGATCT ACGGCGTCGA AGCTGCGGGC CATGGGCTCG ACAAGCTGCA CGCGGCGTCG
ATCGCCGGCG GCAAGCCGGG CGTGCTGCAC GGCAACCGCA CCTATCTGCT GATGGATGCG
GACGGCCAGA TCGAGGAAGC GCATTCGATC TCCGCCGGCC TCGACTATCC GGGCGTCGGC
CCCGAGCACT CCTGGCTGCA CGACGTCGGC CGCGTCAACT TCCTGTCCGC CACCGACACC
GAAGCGCTCG ACGCGTTCAA GCTGTGCTGC CGACTCGAAG GCATCATCCC GGCGCTGGAG
CCGAGCCACG CGCTCGCCAA GGTCGCCGAC CTCGCGCCCA AGCTGCCGAA GGATCACCTG
ATGGTCGTGA ACATGTCCGG CCGCGGCGAC AAGGACCTCG CGTCGGTCGC AGAACATCTC
GGGGGCAAGT TCTGA
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| Protein sequence | MNQALPNSFR SGPDERGHFG IYGGRFVAET LMPLILDLEK AYAEAKADPA FRAEMDNHLK
HYVGRPSALY FAERLTEHFG GAKIYFKRED LNHTGAHKVN NVLGQIMLAK RMGKPRVIAE
TGAGMHGVAT ATMCAKFGLE CVVFMGAVDV ERQQPNVLRM KALGAEVRPV TSGANTLKDA
MNEALRDWVT NVHDTFYCIG TVAGPHPYPM MVRDFQAVIG QEVREQIMQA EGRLPDSLVA
CIGGGSNAMG LFHPFLDDPG VAIYGVEAAG HGLDKLHAAS IAGGKPGVLH GNRTYLLMDA
DGQIEEAHSI SAGLDYPGVG PEHSWLHDVG RVNFLSATDT EALDAFKLCC RLEGIIPALE
PSHALAKVAD LAPKLPKDHL MVVNMSGRGD KDLASVAEHL GGKF
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