Gene Rpal_0068 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0068 
Symbol 
ID6407711 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp72268 
End bp73248 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content66% 
IMG OID642709977 
Productsignal peptide peptidase SppA, 36K type 
Protein accessionYP_001989106 
Protein GI192288501 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0616] Periplasmic serine proteases (ClpP class) 
TIGRFAM ID[TIGR00706] signal peptide peptidase SppA, 36K type 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0824847 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGCTTG ATTCCGATGT GATCGTCGAT CGCCGACGGA TGCGAAGGAA GCTGACGTTC 
TGGCGCGTGG CGGCTGTACT GGTCGCGATC GTCGCTGTGG TGGCGATCGG TGCGATGGTG
TCGCCGGCGG GACGCGGTGC GCTCACGTCG ACCGGCTCGA TCGCCCGCAT CAAGATCGAG
GGCCTGATCC GCAGCAATGA CGAGCGTGTC CAAGCGCTCG ACCGGCTCGG CAAGTCGTCC
TACTCGGCCG TGATCGTCCA CATCAATTCG CCCGGCGGCA CCACTGCGGG CTCCGAGGAA
TTGCACGACG CGCTGGCGAG GCTGAAGGCG AAGAAGCCGA TGGTCGTGGT GGTCGAAGGG
CTCGCCGCCT CCGGCGGCTA CATCGCCGCA CTTGCCTCCG AACACATCGT CGCGCAGCAG
ACCTCACTGG TCGGCTCGAT CGGCGTGCTG TTCCAATATC CGAACGTGTC CGAGCTGCTG
AAGACCGTCG GCGTCAAGGT CGAGGAAGTG AAATCGTCGC CGCTGAAGGC TGCGCCGAAC
GGTTTCGAGC CGACCAGTCC CGAGGCGCGC GCCGCCATCG AGGCGCTGGT GAAGGATTCC
TACGCTTGGT TCCGCGGCAT GGTTCAGCAG AGCCGCAAGA TGACCGACGA TCAGCTCAAC
GTCGTCGCCG ACGGCCGGGT GTTCACCGGG CGCCAGGCCG TGGGCCTGAA ACTGATCGAC
GAACTCGGCG ACGAGAGGAC CGCGATCGCG TGGCTGGAGA AGGCGAAGAA CGTCAAAGCC
GGCCTGCCGG TACGCGACTA CAAGCTCGCA CCGCAGTTCG GCGATCTAAC GTTCCTGCGA
GCTGCGGCTT CCGTTGCGTT CGACGCAGCG GGGCTTGGCG TGATCGCGCG CCGCGTCGAG
CAGACCGGCG CGATGCAGTC GGTCGAACGG CTCGGCCTCG ACGGGATGCT GGCGCTGTGG
GCACCGTCGG CGGGTCAGTG A
 
Protein sequence
MSLDSDVIVD RRRMRRKLTF WRVAAVLVAI VAVVAIGAMV SPAGRGALTS TGSIARIKIE 
GLIRSNDERV QALDRLGKSS YSAVIVHINS PGGTTAGSEE LHDALARLKA KKPMVVVVEG
LAASGGYIAA LASEHIVAQQ TSLVGSIGVL FQYPNVSELL KTVGVKVEEV KSSPLKAAPN
GFEPTSPEAR AAIEALVKDS YAWFRGMVQQ SRKMTDDQLN VVADGRVFTG RQAVGLKLID
ELGDERTAIA WLEKAKNVKA GLPVRDYKLA PQFGDLTFLR AAASVAFDAA GLGVIARRVE
QTGAMQSVER LGLDGMLALW APSAGQ