Gene Rpal_0054 details

Gene Information

• Locus tag: Rpal_0054
• ID: 6407696
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 58136
• End bp: 58597
• Gene Length: 462 bp
• Protein Length: 153 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 642709962
• Product: PTS IIA-like nitrogen-regulatory protein PtsN
• Protein accession: YP_001989092
• Protein GI: 192288487
• COG category: [G] Carbohydrate transport and metabolism; [T] Signal transduction mechanisms
• COG ID: [COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)
• TIGRFAM ID: [TIGR01419] PTS IIA-like nitrogen-regulatory protein PtsN

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.172883
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGATTA CGGATCTTGT CGCGCCCGAG GCCGTCATCC CGGCGCTGAA GGTGATCAGC 
AAGAAGCAGG CGCTGCAGGA ACTCGCGGCG CGTGCAGCGG AGCTGACCGG CCAGAACGAG 
CGCACGATCT TCGAAGTGCT GCTGCAGCGC GAGAAGCTGG GCACCACCGC GGTCGGCTAT 
GGGGTGGCGA TTCCGCACGG CAAGCTGCCG AAGCTGGAGA AGCTGTTCGG GCTGTTCGCG 
CGGCTGGAAC GGCCGATCGA TTTCGAAGCG ATGGACGGGC AGCCGGTCGA CCTGATCTTC 
CTGCTGCTGG CGCCCGAAGG TGCCGGCGCC GACCACCTCA AGGCGCTGGC GCGGATCGCC 
CGCCTGCTGC GCGACCAGGA CGTCGCCAAG AAGCTGCGCG CTTCCCGCGA CGCGCACGCG 
ATCTACTCGG TGTTGGCGCT GCCTCCCGCG ACTGCGGCGT AA 

 

Protein sequence

MTITDLVAPE AVIPALKVIS KKQALQELAA RAAELTGQNE RTIFEVLLQR EKLGTTAVGY 
GVAIPHGKLP KLEKLFGLFA RLERPIDFEA MDGQPVDLIF LLLAPEGAGA DHLKALARIA 
RLLRDQDVAK KLRASRDAHA IYSVLALPPA TAA