| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0053 |
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| Symbol | |
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| ID | 6407695 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 57255 |
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| End bp | 57860 |
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| Gene Length | 606 bp |
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| Protein Length | 201 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642709961 |
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| Product | sigma 54 modulation protein/ribosomal protein S30EA |
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| Protein accession | YP_001989091 |
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| Protein GI | 192288486 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1544] Ribosome-associated protein Y (PSrp-1) |
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| TIGRFAM ID | [TIGR00741] ribosomal subunit interface protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.149044 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCATCC GGATATCCGG CAAAAGCATC AGCATCGGCG AAGCGCTGCG CAGCCGCGTG
AGCGAACGCA CCGAGGAGGT GCTGCGCAAG TATTTCGATG GGAATTACTC GGGGCACTTC
ACGCTCAGCA AAGACGGCTT CGGCTTCCGC ACCGATTGTG CGCTGCACCT CGATTCCGGC
ATCACCCTTG AAGCCGAGTC CAATGCGGCC GACGCCTATG TCAGCGCCGA TCAGGCTCTG
GTGCAGATCG AGAAGCGCCT GCGCCGCTAC AAGAGCCGGC TGAAGGATCG CTCGTCCCGC
AAGGCTCATG CGGAAGCCAA CGTGCTCGCC GAGCTCAGCA CGCCGGTCGA TGCGGCCAGC
TACGTCATCG AAGCGCCCGG CGACGAAGAG CATCACGAGG ACGCCTACAA CCCGGTGATC
ATCGCCGAAG CCACCACCGC GATGAAGCGG CTGTCGGTGA GCGAGGCGGT GGTCGAGCTC
GATCTTACGG GTGCACCGGT GGTGGTGTTC CTGCACGGCA GCTCGGGCCG CGTGAACATC
ATTTATCGCC GCGCCGACGG CAATATCGGC TGGATCGACC CGCCGGTGCT GAACGGCGCG
AACTGA
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| Protein sequence | MTIRISGKSI SIGEALRSRV SERTEEVLRK YFDGNYSGHF TLSKDGFGFR TDCALHLDSG
ITLEAESNAA DAYVSADQAL VQIEKRLRRY KSRLKDRSSR KAHAEANVLA ELSTPVDAAS
YVIEAPGDEE HHEDAYNPVI IAEATTAMKR LSVSEAVVEL DLTGAPVVVF LHGSSGRVNI
IYRRADGNIG WIDPPVLNGA N
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