Gene Rpal_0049 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0049 
Symbol 
ID6407691 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp53593 
End bp54258 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content66% 
IMG OID642709957 
ProductOstA family protein 
Protein accessionYP_001989087 
Protein GI192288482 
COG category[S] Function unknown 
COG ID[COG1934] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03002] lipopolysaccharide transport periplasmic protein LptA 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.162045 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCATTG CCGTTTGGTT TCGCCGGCTT CGTGGCCCGG TCGCGCTCGC CAGTGCCGCG 
CTGGTTGCTC TGTACGTTGG CGGCACGGTG CCGGCGACGG CGCAGAGCGC TGTGCAGGGC 
GTGCCGAACG CGATGCAGGG CTTCTCGCAG AACCGCGACA AGCCGATCCA GATCGAATCC 
GACACCCTGG AAGTGCGCGA CAAGAACAAG GAAGCGACCT TCACCGGCAA CGTCAAAGTG 
GTGCAGGGCG ACACCACCAT GACGTCGCAA ACGCTGGTGG TGTTCTACGA CCAGGATCAG 
GCGCCGGCGA AGGGCGCCAA GGGCAAGCCG ATGCCGGCGG CCGCGCCGGG CCCGGACGGC 
GCGTCGTCGA TCCGGCGGCT CGAAGCCAAG GGCCATGTCG TCGTGACCCA AAAGGATCAG 
GTCGTCACCG GCGACAAGGC GGTATTCGAG ACCAAGACCA ATTTGGTGAC GATGACCGGC 
AACGTGGTGC TGACCCAGGC CCGCAATGTG GTGCGCGGCG ACCGGCTTCT GGTCGACATG 
ACCACCGGCG TGTCACGGGT GGAATCTGAC AGCGGCCGGG TGCAGGGCCT GTTTCAATCC 
TCGGGCGCGA ATGGCGGCGG ACCACTGCCG CTCGGACCGC CGACCAGCTC CGGTAAGCCG 
AAGTGA
 
Protein sequence
MPIAVWFRRL RGPVALASAA LVALYVGGTV PATAQSAVQG VPNAMQGFSQ NRDKPIQIES 
DTLEVRDKNK EATFTGNVKV VQGDTTMTSQ TLVVFYDQDQ APAKGAKGKP MPAAAPGPDG 
ASSIRRLEAK GHVVVTQKDQ VVTGDKAVFE TKTNLVTMTG NVVLTQARNV VRGDRLLVDM 
TTGVSRVESD SGRVQGLFQS SGANGGGPLP LGPPTSSGKP K