Gene Rpal_0047 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0047 
Symbol 
ID6407689 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp52000 
End bp52614 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content65% 
IMG OID642709955 
Product3'-5' exonuclease 
Protein accessionYP_001989085 
Protein GI192288480 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0349] Ribonuclease D 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGATCC GCCTGCATCG CGGCGACCTG CCGGATCTTT CCCGCTATAC AAATTCGGTG 
GCGATCGACA CCGAGACGAT GGGGCTGCAT CCGCATCGCG ACCGGCTGTG CGTGGTGCAA 
TTGTCGAACG GCGACGGCAG CGCCGATGTG GTGCAGATTC CGCAGGGTGC GACCGATGCG 
CCGAACCTGA AGAAGCTGCT CGGCGATCCG GCCGTGGTGA AGATCTTCCA CTTCGCCCGA 
TTCGATCTGG CGGCGCTGTA CAAGGCGTTC GGCGTGATGC CGCAGCCGGT GTACTGCACC 
AAGATCGCCT CGCGCCTGAC CCGCACCTAC ACCGACCGTC ATGGCCTGAA GGACCTGGTG 
CGCGAACTTC TCGGGATTGA TCTGTCGAAG CAGCAGCAGT CCAGCGACTG GGGCGCCGAT 
TCCCTGAGCG ACGCGCAACT CGCTTACGCC GCCTCCGACG TGCTGCACCT GCACGCGCTG 
CGCGACAAGC TCGACACCAT GCTGGCGCGG GAGAATCGCA CCGATCTCGC CGCCGCCTGC 
TTCGGCTTCC TGCCCATCCG TGCCCGGCTC GACCTCGACG GCTGGAGCGA AGAGGACATT 
TTCGCTCATT CGTGA
 
Protein sequence
MTIRLHRGDL PDLSRYTNSV AIDTETMGLH PHRDRLCVVQ LSNGDGSADV VQIPQGATDA 
PNLKKLLGDP AVVKIFHFAR FDLAALYKAF GVMPQPVYCT KIASRLTRTY TDRHGLKDLV 
RELLGIDLSK QQQSSDWGAD SLSDAQLAYA ASDVLHLHAL RDKLDTMLAR ENRTDLAAAC 
FGFLPIRARL DLDGWSEEDI FAHS