| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0046 |
|---|
| Symbol | |
|---|
| ID | 6407687 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 50621 |
|---|
| End bp | 51586 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642709953 |
|---|
| Product | NADH dehydrogenase (ubiquinone) |
|---|
| Protein accession | YP_001989084 |
|---|
| Protein GI | 192288479 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0702] Predicted nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCGA ATATCGACAC GCTCGTCACG GTTTTCGGTG GCTCAGGCTT CCTCGGCCGG
CACGTCGTCA GCGCGCTGGC GCGGCGCGAC TATCGGATTC GGGTCGCGGT CCGTCGTCCT
GAGCTTGCTG GGCATCTGCA GCCGCTCGGC CGTGTCGGGC AGATCCACGC CGTGCAGGCG
AATCTGCGTT ACCCCGAATC GGTCGCGGCG GCGATGCGCG GCTCGCACGT GGCGATCAAC
CTGGTCGGCA TTCTCGCCGA GGGCGGCGCG CAGAAATTCG ACGCGGTGCA GGGCAGTGGT
GCCGCCACCG TGGCGCAGGC GGCGGCTTCA GTCGGTGCCC GCATGGTGCA CATCTCGGCG
ATCGGCGCCG ATGCGAATTC GCCGGCCCGC TACGCACGCA GCAAGGCCGC CGGCGAACAG
GCGGTGCTTG CCGCGGTGCC GCAGGCCACC ATCTTCCGTC CCTCGGTGGT GTTCGGCCCG
GAAGACCAGT TCACCAACCG CTTCGCCATG CTGGCGCGGA TGTCGCCGGT GCTGCCGCTG
GTCGGCGCCG ACACCAAGCT GCAGCCGGTC TATGTCGGCG ATGTCGCGAC GGCGATTGCC
GATGCGGTCG ATGATCTCGC CAAGCCGGGC GCGACCTACG AACTCGGCGG TCCGGAAGAG
CTGACGATGC GCGAAATCAT GCGCATCATT CTGCAGACCA CCGATCGCAA TCCGCTATTG
GTGCCGCTGC CGTTCGGTCT CGCCAGCCTG CAGGCGATGC TGCTGCAGTT CGCGCCGGGC
GCGTTCAAGC TGACGCCGGA TCAGGTGCGG ATGCTGGAGG TCGACAACGT GGTGTCGGAA
GCCGCCAAGT CGGCCGGGCT GACGCTGCAG GGCCTCGGCA TACAGCCCGA TTCGCTGCAG
GCGATCGTGC CGTCCTATCT GTGGCGGTTC CGCAAGACCG GCCAGTTCGC GCGCAAGACC
GCGTAA
|
|---|
| Protein sequence | MTSNIDTLVT VFGGSGFLGR HVVSALARRD YRIRVAVRRP ELAGHLQPLG RVGQIHAVQA
NLRYPESVAA AMRGSHVAIN LVGILAEGGA QKFDAVQGSG AATVAQAAAS VGARMVHISA
IGADANSPAR YARSKAAGEQ AVLAAVPQAT IFRPSVVFGP EDQFTNRFAM LARMSPVLPL
VGADTKLQPV YVGDVATAIA DAVDDLAKPG ATYELGGPEE LTMREIMRII LQTTDRNPLL
VPLPFGLASL QAMLLQFAPG AFKLTPDQVR MLEVDNVVSE AAKSAGLTLQ GLGIQPDSLQ
AIVPSYLWRF RKTGQFARKT A
|
|---|
| |