Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0030 |
Symbol | |
ID | 6407671 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 33307 |
End bp | 35061 |
Gene Length | 1755 bp |
Protein Length | 584 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 642709937 |
Product | Heparinase II/III family protein |
Protein accession | YP_001989068 |
Protein GI | 192288463 |
COG category | [S] Function unknown |
COG ID | [COG5360] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTCGGCCA CCCCCCGCAG AGGAATTTCG GCGCTGATCG TGGGCCGCTT CGCGCGGACC GTGATGGCGC GCGCCTCCGG TGGTTCGGTG GCGGTGACCC GGCTGTGGCC CGGCCGCACC GATCGGCTGA TCATCGCGCC GCACGATCTG CGCACCGCGG ACGCCACCCG TGCGGCTGAG ATCTACGCCG GCCGCTTTGT CTTCGCAGGC AAGATCGTCA CCTGCCACGG CCGCTCGATC TTCGATCTCG AACCGCCTTC CGACGATTGG GAAGCCGCGC TGCTCGGCTT CGGCTGGCTG CGCCACCTGC GCGCCGCCGA TACCGCGATC ACCCGCGCCA ATGCCCGCTC GCTTGTCGAC GACTGGCTCA GCAACATGTC GCGCACCGGC CCGGTCGGGC GGCGGCCGGA CGTGTTGGCG CGGCGGGTGA TCTCGCTATT GTCGCAGGCG CCGCTGGTGC TGTCCGACAC CGATGGCAAG TTCTATCGCC GCTATTTGCG CGGCCTGACC CGCGAAATCC GAGCGCTGCG CTACGCGCTG CTCGATGTGC AGGACGGCGT GCCGCGGCTG CAGGTGCTGA TCGCGCTGTG CTACGCGTCG CTGTGCCTCG CTAACCAGGC GCGGCAGATC CGCGGCGCCA CCAAGAAGCT GTCCGACGAG CTGCAGCGCC AAATCCTCCC CGATGGCGGC CACATCTCGC GCAATCCGAG CGCGTTGATC GAATTGTTGA TCGACCTGTT GCCGCTCCGC CAGACCTTCG CGGCCCGCAA CATCGCGCCG CCGCCGGCGC TCCTCAATGC GATCGACCGG ATGATGCCGA TGCTGCGGTT CTTCCGCCAC GGCGACGGCA ATTTCGCGTT GTTCAATGGC ATGAGCGCGA CGCCGTCCGA TCTGCTCGCG ACGCTGCTGG CCTATGACGA CAGCCAGGGT ACGCCGCTCG CCAGCATGCC GCATTCCGGC TACCAGCGGA TCGACGCCGG CACCACCCTG GTGATCGTCG ATGCCGGCAC GCCGCCGCCC GCCAATGTCA GCCAGGAGGC GCATGCCGGT TGCCTGTCGT TCGAATTGTC GTCGGGCCCG TGCCGGATCG TGATCAACAG CGGCATGCCG ACCACCAATC GCGAGAGCTG GCGCGGCTTT GCCCGCTCGA CGGTGGCGCA CTCCACCGTC ACCTGCCACG ACACCTCGTC CTGCAGCTTC GTCGAGCGCT CGGCGATGAA GCGCTTCCTG CACGGCGCGC CGGTGGTCGG CGGCCCGCGT CAGGTCGAAA ACCGCCGTGA AGAAGTTGCC GGCGGCGTGC TGCTGACGAC GTCGCACGAC GGCTACCGCG ACAAATTCGG CGTGCTGCAT CGGCGTGTCC TCATGGTGAA GCACGACGGC AGCCGGGTCG ACGGTGAGGA CAGCCTGTCC CCGGTGCAGG GCGGCCGACA CCGCGCCGCG CAGGCCGACT ATGCCGTGCG CTTCCACCTG CACCCGCTGG TCAAGGCCAG CCGTCTGCAC GACGCCCGCG GCGTGATGCT GGTGCTGCCC AATCGCGAGG TCTGGACCTT CGAGGCGGCG GACGACAAGG TCGACCTTGA AGAGACCGTG TTCCTGGCTG GCAATGACGG GCCGCGGCGC TCGACCCAGA TCGTGATCCG GCAGAACTCG ATCGAAGCGC CGAACTTGCG CTGGAGCTTT ATCCGCTCCA ATGCCTCGCC GCAGGCGACC AGTGCCCGCC GCGCCGCCCG CCACGAGCCT GAACTGCCGC TCTGA
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Protein sequence | MSATPRRGIS ALIVGRFART VMARASGGSV AVTRLWPGRT DRLIIAPHDL RTADATRAAE IYAGRFVFAG KIVTCHGRSI FDLEPPSDDW EAALLGFGWL RHLRAADTAI TRANARSLVD DWLSNMSRTG PVGRRPDVLA RRVISLLSQA PLVLSDTDGK FYRRYLRGLT REIRALRYAL LDVQDGVPRL QVLIALCYAS LCLANQARQI RGATKKLSDE LQRQILPDGG HISRNPSALI ELLIDLLPLR QTFAARNIAP PPALLNAIDR MMPMLRFFRH GDGNFALFNG MSATPSDLLA TLLAYDDSQG TPLASMPHSG YQRIDAGTTL VIVDAGTPPP ANVSQEAHAG CLSFELSSGP CRIVINSGMP TTNRESWRGF ARSTVAHSTV TCHDTSSCSF VERSAMKRFL HGAPVVGGPR QVENRREEVA GGVLLTTSHD GYRDKFGVLH RRVLMVKHDG SRVDGEDSLS PVQGGRHRAA QADYAVRFHL HPLVKASRLH DARGVMLVLP NREVWTFEAA DDKVDLEETV FLAGNDGPRR STQIVIRQNS IEAPNLRWSF IRSNASPQAT SARRAARHEP ELPL
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