Gene Rpal_0030 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0030 
Symbol 
ID6407671 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp33307 
End bp35061 
Gene Length1755 bp 
Protein Length584 aa 
Translation table11 
GC content69% 
IMG OID642709937 
ProductHeparinase II/III family protein 
Protein accessionYP_001989068 
Protein GI192288463 
COG category[S] Function unknown 
COG ID[COG5360] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCGGCCA CCCCCCGCAG AGGAATTTCG GCGCTGATCG TGGGCCGCTT CGCGCGGACC 
GTGATGGCGC GCGCCTCCGG TGGTTCGGTG GCGGTGACCC GGCTGTGGCC CGGCCGCACC
GATCGGCTGA TCATCGCGCC GCACGATCTG CGCACCGCGG ACGCCACCCG TGCGGCTGAG
ATCTACGCCG GCCGCTTTGT CTTCGCAGGC AAGATCGTCA CCTGCCACGG CCGCTCGATC
TTCGATCTCG AACCGCCTTC CGACGATTGG GAAGCCGCGC TGCTCGGCTT CGGCTGGCTG
CGCCACCTGC GCGCCGCCGA TACCGCGATC ACCCGCGCCA ATGCCCGCTC GCTTGTCGAC
GACTGGCTCA GCAACATGTC GCGCACCGGC CCGGTCGGGC GGCGGCCGGA CGTGTTGGCG
CGGCGGGTGA TCTCGCTATT GTCGCAGGCG CCGCTGGTGC TGTCCGACAC CGATGGCAAG
TTCTATCGCC GCTATTTGCG CGGCCTGACC CGCGAAATCC GAGCGCTGCG CTACGCGCTG
CTCGATGTGC AGGACGGCGT GCCGCGGCTG CAGGTGCTGA TCGCGCTGTG CTACGCGTCG
CTGTGCCTCG CTAACCAGGC GCGGCAGATC CGCGGCGCCA CCAAGAAGCT GTCCGACGAG
CTGCAGCGCC AAATCCTCCC CGATGGCGGC CACATCTCGC GCAATCCGAG CGCGTTGATC
GAATTGTTGA TCGACCTGTT GCCGCTCCGC CAGACCTTCG CGGCCCGCAA CATCGCGCCG
CCGCCGGCGC TCCTCAATGC GATCGACCGG ATGATGCCGA TGCTGCGGTT CTTCCGCCAC
GGCGACGGCA ATTTCGCGTT GTTCAATGGC ATGAGCGCGA CGCCGTCCGA TCTGCTCGCG
ACGCTGCTGG CCTATGACGA CAGCCAGGGT ACGCCGCTCG CCAGCATGCC GCATTCCGGC
TACCAGCGGA TCGACGCCGG CACCACCCTG GTGATCGTCG ATGCCGGCAC GCCGCCGCCC
GCCAATGTCA GCCAGGAGGC GCATGCCGGT TGCCTGTCGT TCGAATTGTC GTCGGGCCCG
TGCCGGATCG TGATCAACAG CGGCATGCCG ACCACCAATC GCGAGAGCTG GCGCGGCTTT
GCCCGCTCGA CGGTGGCGCA CTCCACCGTC ACCTGCCACG ACACCTCGTC CTGCAGCTTC
GTCGAGCGCT CGGCGATGAA GCGCTTCCTG CACGGCGCGC CGGTGGTCGG CGGCCCGCGT
CAGGTCGAAA ACCGCCGTGA AGAAGTTGCC GGCGGCGTGC TGCTGACGAC GTCGCACGAC
GGCTACCGCG ACAAATTCGG CGTGCTGCAT CGGCGTGTCC TCATGGTGAA GCACGACGGC
AGCCGGGTCG ACGGTGAGGA CAGCCTGTCC CCGGTGCAGG GCGGCCGACA CCGCGCCGCG
CAGGCCGACT ATGCCGTGCG CTTCCACCTG CACCCGCTGG TCAAGGCCAG CCGTCTGCAC
GACGCCCGCG GCGTGATGCT GGTGCTGCCC AATCGCGAGG TCTGGACCTT CGAGGCGGCG
GACGACAAGG TCGACCTTGA AGAGACCGTG TTCCTGGCTG GCAATGACGG GCCGCGGCGC
TCGACCCAGA TCGTGATCCG GCAGAACTCG ATCGAAGCGC CGAACTTGCG CTGGAGCTTT
ATCCGCTCCA ATGCCTCGCC GCAGGCGACC AGTGCCCGCC GCGCCGCCCG CCACGAGCCT
GAACTGCCGC TCTGA
 
Protein sequence
MSATPRRGIS ALIVGRFART VMARASGGSV AVTRLWPGRT DRLIIAPHDL RTADATRAAE 
IYAGRFVFAG KIVTCHGRSI FDLEPPSDDW EAALLGFGWL RHLRAADTAI TRANARSLVD
DWLSNMSRTG PVGRRPDVLA RRVISLLSQA PLVLSDTDGK FYRRYLRGLT REIRALRYAL
LDVQDGVPRL QVLIALCYAS LCLANQARQI RGATKKLSDE LQRQILPDGG HISRNPSALI
ELLIDLLPLR QTFAARNIAP PPALLNAIDR MMPMLRFFRH GDGNFALFNG MSATPSDLLA
TLLAYDDSQG TPLASMPHSG YQRIDAGTTL VIVDAGTPPP ANVSQEAHAG CLSFELSSGP
CRIVINSGMP TTNRESWRGF ARSTVAHSTV TCHDTSSCSF VERSAMKRFL HGAPVVGGPR
QVENRREEVA GGVLLTTSHD GYRDKFGVLH RRVLMVKHDG SRVDGEDSLS PVQGGRHRAA
QADYAVRFHL HPLVKASRLH DARGVMLVLP NREVWTFEAA DDKVDLEETV FLAGNDGPRR
STQIVIRQNS IEAPNLRWSF IRSNASPQAT SARRAARHEP ELPL