Gene Rpal_0028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0028 
Symbol 
ID6407669 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp30377 
End bp31471 
Gene Length1095 bp 
Protein Length364 aa 
Translation table11 
GC content66% 
IMG OID642709935 
Productphospho-2-dehydro-3-deoxyheptonate aldolase 
Protein accessionYP_001989066 
Protein GI192288461 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 
TIGRFAM ID[TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTGACCA CCACAGACGA CCTTCGCCTT CAGAAAATCA CCGAGCTGAG TACGCCTGCC 
GAGGTGATGG GCGAGATTCC GCGCACACTG ACCGCAACGC GTACCGTTGC GGCGAGCCGC 
AGCGCGATTC ATGCCATCCT GACCGGAGCC GACGACCGGC TCCTCGTCGT TGTCGGCCCC 
TGTTCGATTC ACGATCCGGC CGCGGCCATG GACTATGCCA GCCGTCTGGC GGCGCTGCGC 
GAGACCCTGG CCGACCGGCT CGAGATCGTG ATGCGGGTGT ATTTCGAAAA GCCGCGCACC 
ACGGTGGGTT GGAAGGGACT GATCAACGAC CCCGATCTCG ATGGCAGCTT CCGGATCGAC 
AAGGGGCTAC GGCTGGCGCG TGAAGTGCTG TCGGCCGTAA ACAATCTCGG CCTGCCAGCG 
GCGACCGAAT TCCTCGATCT GATCACGCCG CAATACATCG CGGATCTCGT CGCCTGGGGC 
GCGATCGGCG CGCGCACCAC CGAGAGCCAG ATCCACCGCG AACTCGCGTC AGGCCTGTCA 
TGCCCGATCG GCTTCAAGAA TGGCACCGAC GGCAATGTCC GGATCGCCGC GGAGGCGGTG 
AAGTCCGCGG CGCAGCCGCA TCATTTCATG GCGGTGACCA AGGGCGGGCG CAATGCGATC 
GCGGCCACCA CTGGTAACAG CGACTGCCAC GTCATCCTGC GCGGCGGCGT CACACCGAAC 
TACGATGCCG CAAGTGTGGA AACCGCCGCA GCGGTACTCG GCAAGATCGG CCTGCCGCCG 
CGCCTGATGA TCGACGCCAG CCACGCCAAC AGCAGCAAGC AGCCGGACAA CCAGCCGAAG 
GTAACGGCCG ATATCGGGCG TCAGATGGCG GCTGGCGAGA GCCGCATCAT CGGCGTGATG 
ATCGAGAGCA ATCTGGTCGC CGGTCGGCAG GATGTGGCGC CGGGTCGGCC GCTGCAATAC 
GGCCAGAGCA TCACCGACGG CTGTATCGAC TGGGCGACGA CCGAGACGGT GCTGCACGAG 
CTGGCCGATG CGGTCGAGAG CCGGCGAGCT GCGCGGCACG CCGCAAGCGC TCAGCAGAAA 
GGTGCTGCGG CGTGA
 
Protein sequence
MLTTTDDLRL QKITELSTPA EVMGEIPRTL TATRTVAASR SAIHAILTGA DDRLLVVVGP 
CSIHDPAAAM DYASRLAALR ETLADRLEIV MRVYFEKPRT TVGWKGLIND PDLDGSFRID 
KGLRLAREVL SAVNNLGLPA ATEFLDLITP QYIADLVAWG AIGARTTESQ IHRELASGLS 
CPIGFKNGTD GNVRIAAEAV KSAAQPHHFM AVTKGGRNAI AATTGNSDCH VILRGGVTPN 
YDAASVETAA AVLGKIGLPP RLMIDASHAN SSKQPDNQPK VTADIGRQMA AGESRIIGVM 
IESNLVAGRQ DVAPGRPLQY GQSITDGCID WATTETVLHE LADAVESRRA ARHAASAQQK 
GAAA