| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0025 |
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| Symbol | |
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| ID | 6407666 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 25778 |
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| End bp | 26653 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642709932 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_001989063 |
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| Protein GI | 192288458 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCATCAC TGCAAGGCAA GACGCTGTTC ATCACCGGGG CGAGCCGGGG AATCGGGCTC
GCGATCGCCC TGCGGGCGGC GCGGGATGGA GCCAATGTGG CGATCGCCGC CAAGACCACC
GAGCCGCATC CGAAGCTGAA GGGCACGATC TACACCGCGG CCGAGGAGAT CGTCGCGGCG
GGCGGCAAGG CGCTGCCGAT GGTCTGCGAC ATCCGCGACG AGGCGCAGGT GATCGACGCG
ATCGGCAAGA CGGTGGCGGA GTTCGGCGGT ATCGACATCT GCGTCAACAA CGCCAGCGCG
ATCAGCCTGA CGAATTCGCA GGCGACCGAC ATGAAGCGCT ACGACCTGAT GATGGGAATC
AACACCCGCG GGACCTTCAT GGTGTCGAAA TATTGCATCC CGCACCTGAA GAAGGCGGCC
AATCCGCACA TCCTGATGCT GTCGCCGCCG CTCGACATGA AGGCGAAGTG GTTCGCAGCG
TCGACTGCCT ACACCATGGC GAAGTTCGGC ATGAGCATGG TGGCGCTCGG TCTCTCGGGC
GAACTGAAGC ACGCCGGCGT TGCGGTGAAT GCGCTGTGGC CGCGCACCAC GATCGCGACC
GCCGCGGTCG GCAATCTGCT CGGCGGCGAC GCGATGATCC GCGCGAGCCG CACGCCGGAG
ATCATGGGTG ACGCCGCCCA TGCGATCCTG GCCCGTCCCT CGCGTGAATT CACCGGCCAG
TTCTGCATCG ACGACAGCGT GTTGTATGAA GCCGGCGTGC GCGACTTCGA GCCATATCGC
GTCGATCCGA GCGTGCCGCT GATGTCGGAC TTCTTTGTTC CGGACGACAG CGTTCCGCCG
CCCGGCGTGA CCGTCACGCC GCTGCCGATG GGGTAG
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| Protein sequence | MASLQGKTLF ITGASRGIGL AIALRAARDG ANVAIAAKTT EPHPKLKGTI YTAAEEIVAA
GGKALPMVCD IRDEAQVIDA IGKTVAEFGG IDICVNNASA ISLTNSQATD MKRYDLMMGI
NTRGTFMVSK YCIPHLKKAA NPHILMLSPP LDMKAKWFAA STAYTMAKFG MSMVALGLSG
ELKHAGVAVN ALWPRTTIAT AAVGNLLGGD AMIRASRTPE IMGDAAHAIL ARPSREFTGQ
FCIDDSVLYE AGVRDFEPYR VDPSVPLMSD FFVPDDSVPP PGVTVTPLPM G
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