| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0020 |
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| Symbol | |
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| ID | 6407661 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 20369 |
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| End bp | 22015 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642709927 |
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| Product | cbb3-type cytochrome c oxidase subunit I |
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| Protein accession | YP_001989058 |
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| Protein GI | 192288453 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG3278] Cbb3-type cytochrome oxidase, subunit 1 |
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| TIGRFAM ID | [TIGR00780] cytochrome c oxidase, cbb3-type, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCAAG CCCTGAATTC GAAGCGGATC ACCCTTGGCG AGGGTGGTCT CACGGTCGTG
TTCGCATTGA CCACGATCCT GTCCATCTAT GCGGCGATTT ACGCCAAGGA TGCTCCCTTC
GCATTTCATG CCGCGCTAGC GGCCGCGTTC AGCGCATGGG CGGTGTTCGC GATCATCGTT
CGGCATCGCA GCCGTTCGGG CCTGCCGCCG CAGGAAATCA ACGGCGCTCC GAATTACAAT
CTCGGGCCGA TAAAGTTCCT CTCGTTCATG GCGATGTTTT GGGGCATCGC CGGCTTCTCG
GCCGGCCTCT ACATTGCCCT TGAGCTTGCC TATCCGGGCT TGAACATCGC CCAGTGGGTC
AACTTCGGCC GGCTCCGTCC GCTGCACACT TCGGCGGTGA TCTTCGCATT CGGCGGCAAC
GTGCTGCTCG CCACCTCGTT CTACGTGGTG CAGAAGACCA CCCGGGCACG GCTCGCCGGT
GACTTGGCGC CGTGGTTTGT GGCGATCGGC TACAACTTCT TCATCGTCAT CGCCGGCACT
GGCTATCTCC TGGGTGTCAC CCAGTCGAAG GAATACGCCG AGCCGGAATG GTACGCCGAC
CTCTGGCTCA CCATCGTTTG GGTTACCTAC CTGCTGGTGT TCCTGGCGAC GCTGATGAAG
CGCAAGGAAC CCCACATCTA CGTGGCGAAC TGGTTCTATC TCGCGTTCAT CATCACTATC
GCGGTGCTGC ACCTCGGCAA CAACCCGACG CTGCCGGTCA GCTTCCTCGG CTCGAAGTCC
TACATCGCCT GGTCGGGCGT GCAGGACGCG ATGTTCCAGT GGTGGTACGG CCACAACGCG
GTCGGCTTCT TCCTCACCGC CGGCTTCCTC GCCATCATGT ACTACTTCAT CCCGAAGCGG
GCTGAACGGC CGGTCTATTC CTATCGGCTG TCGATCATCC ACTTCTGGGC GCTGATCTTC
CTGTACATCT GGGCTGGTCC GCACCACCTG CACTACACCG CACTGCCCGA CTGGACGCAG
ACCCTCGGCA TGACCTTCTC GATCATGCTG TGGATGCCCT CCTGGGGCGG CATGATCAAC
GGCCTGATGA CGCTGTCGGG CGCCTGGGAC AAGCTCCGCA CCGACCCCGT GCTGCGCATG
ATGGTGGTGT CGGTCGCCTT CTACGGCATG TCGACCTTCG AAGGTCCGAT GATGGCGATT
AAGGCGGTCA ACTCGCTCAG CCACTACACC GACTGGACCA TCGGCCACGT CCACTCCGGC
GCGCTCGGCT GGGTCGGCTT CGTCTCCTTC GGTGCTCTGT ACTGCCTCGT GCCGTGGGTC
TGGGGCCGCA AGCAGCTCTA CAGCATCCGC CTGGTGAACT GGCACTTCTG GATCGCGACC
CTCGGCATCG TCCTCTACAT CTCGGCGATG TGGGTGTCGG GCATCCTGCA AGGTCTGATG
TGGCGTGCCT ACACCTCGCT CGGCTTCCTC GAATACTCGT TCATCGAGTC GGTCGAAGCG
ATGCACCCCT TCTATGCCAT CCGCGCCGCC GGCGGCGGCC TGTTCCTGAT CGGCGCGCTG
ATCATGGCAT ACAACCTCTG GATGACCGTT CGCGTCGGCG AACGGTCCGA GGCTCAGCCT
CGCGTCGCCC TGCAGCCTGC CGAGTAA
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| Protein sequence | MNQALNSKRI TLGEGGLTVV FALTTILSIY AAIYAKDAPF AFHAALAAAF SAWAVFAIIV
RHRSRSGLPP QEINGAPNYN LGPIKFLSFM AMFWGIAGFS AGLYIALELA YPGLNIAQWV
NFGRLRPLHT SAVIFAFGGN VLLATSFYVV QKTTRARLAG DLAPWFVAIG YNFFIVIAGT
GYLLGVTQSK EYAEPEWYAD LWLTIVWVTY LLVFLATLMK RKEPHIYVAN WFYLAFIITI
AVLHLGNNPT LPVSFLGSKS YIAWSGVQDA MFQWWYGHNA VGFFLTAGFL AIMYYFIPKR
AERPVYSYRL SIIHFWALIF LYIWAGPHHL HYTALPDWTQ TLGMTFSIML WMPSWGGMIN
GLMTLSGAWD KLRTDPVLRM MVVSVAFYGM STFEGPMMAI KAVNSLSHYT DWTIGHVHSG
ALGWVGFVSF GALYCLVPWV WGRKQLYSIR LVNWHFWIAT LGIVLYISAM WVSGILQGLM
WRAYTSLGFL EYSFIESVEA MHPFYAIRAA GGGLFLIGAL IMAYNLWMTV RVGERSEAQP
RVALQPAE
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