| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_2489 |
|---|
| Symbol | |
|---|
| ID | 6376185 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | - |
|---|
| Start bp | 2656483 |
|---|
| End bp | 2657382 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 642684966 |
|---|
| Product | Tetratricopeptide TPR_2 repeat protein |
|---|
| Protein accession | YP_001960864 |
|---|
| Protein GI | 189501394 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4105] DNA uptake lipoprotein |
|---|
| TIGRFAM ID | [TIGR03302] outer membrane assembly lipoprotein YfiO |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.318868 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTTT CGAGACCTAT GATTACAAGA ATGGCCTTGA TTACCCTAGT GTTTCTGGCG
GCTGGGACGC TGTTCACAGC CTGTTCATCG GTAAAAGCGC CAAAATCAGG TGAAGTCAGC
GAAAGATATT CCTACGCTCA GGCACTGATC GCTGACGAGG ATTATGACAA AGCTGTTTTC
GAGCTGGAGT CACTTATGTT TGATACAAGG GCAACTGCCC TCGAGGATGA TGTTCTTTTT
TCGTTAGCTG AGGCGTATTA CAACTCCAAG CAGTATCTGC TGGCAGTAGA TATTTACAAG
AGACTGCTGG AGCAGACTCC CGGTTCGCCC TATGCAGAAG ACGCCCAGTT TAAACTGGCG
CAATCGCATA AAAAGCTCTC CCCTGTTTCA ACACGTGATC ATGAGCATAC CAGAAAGGCT
ATTCGTGAAT TTCAGCTCTA TCTGGAACTC TATCCTGTTC GCGATCCCCA GCAGCTGAAG
AGTGATATTG ATCTCTATAC AGAGCTTTCA AGGCTCAACC CGGAAAATGA CTCGTACAAA
AGAAGCCTTG CCGCAGCGGA GGCCCAGTAT GCAAGGATTG ATAACGTTAC CGAGAGTATT
TCCAGCATAA CACTGCTCAG GGAAAAGCTG GCGGAGCACG AGTTCAGCAT AGCGGAGCAT
TACCGTAAAC TGAAAAAATA CAGGGGAGCA TTGTCCTACT ATGACGGAAT AATCCGTTTC
TATCCCGATA CTGTCTATGT CGAAAAAGCG TGGTACGGCA AGATCGACGT TCTCGTAAAA
AGAGAGAAAT GGTTTGAAGC ACAGGCCGCT ATCGAAGCCT ATGATCAGCA GTTTCCGGAG
AACATGGGCA AGGTTGATGA TTTTCGTGAG AAAGTCATCA GGCACTTTGA AAATTCCTGA
|
|---|
| Protein sequence | MPVSRPMITR MALITLVFLA AGTLFTACSS VKAPKSGEVS ERYSYAQALI ADEDYDKAVF
ELESLMFDTR ATALEDDVLF SLAEAYYNSK QYLLAVDIYK RLLEQTPGSP YAEDAQFKLA
QSHKKLSPVS TRDHEHTRKA IREFQLYLEL YPVRDPQQLK SDIDLYTELS RLNPENDSYK
RSLAAAEAQY ARIDNVTESI SSITLLREKL AEHEFSIAEH YRKLKKYRGA LSYYDGIIRF
YPDTVYVEKA WYGKIDVLVK REKWFEAQAA IEAYDQQFPE NMGKVDDFRE KVIRHFENS
|
|---|
| |