Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphamn1_2463 |
Symbol | |
ID | 6376158 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium phaeobacteroides BS1 |
Kingdom | Bacteria |
Replicon accession | NC_010831 |
Strand | + |
Start bp | 2626484 |
End bp | 2628898 |
Gene Length | 2415 bp |
Protein Length | 804 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 642684940 |
Product | DNA topoisomerase I |
Protein accession | YP_001960838 |
Protein GI | 189501368 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA [COG0551] Zn-finger domain associated with topoisomerase type I |
TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTTCTT CTCCAGCAAG CTCGTCAGCA AAAGGAAAAA CACTGATTGT TGTCGAATCC CCGTCAAAGG CTAAAACCAT TAATAAATAT CTTGGTTCAG ATTACCTGGT GTTCGCCTCT GTCGGCCATA TTAAAGACCT TCCCAAAAAG GAGATCGGAC TGGATTTCGA CAATAATTAT GAACCCCGCT ATGAAGTTAT TTCCGGCAAG GAAAAGGTTG TCCGTCAGCT GAAAAAGCTT GCCGGTCAAG CCAATGATAT TCTGATAGCC ACTGACCCTG ACCGTGAGGG AGAGGCTATC GCGTGGCATA TTGCCAACGA GGTCGATGCT GCACAAAAAC CTGTCCATAG GGTGCTGTTT AACGAGATCA CGAAAAAAGC CATCCTCGAA GCGATCAACG ACCCGCTCCA GATTGACTAC CGTCTGGTTC GCTCTCAGCA GACCCGACAG GGCCTGGATA AAATCGTCGG GTACAAAATA AGCCCTTTTC TCTGGAATGT GGTTATGCGG GGATTATCCG CCGGAAGGGT GCAATCCGTT TCCCTGAGAC TCATCTGCGA ACGGGAGGCG GAAATCGATA AGTTTGAACC CAAAGAGTAC TGGACTATCT TTGCCGATTT CACGACCGGA TCAGGAGAAA CCTTCTCGAC CAAACTGGTC AGAATCGACA GTAACAAGGC GGAAATCACC AATCAGTCCG ACGCCGAGAA AACAGCGTCG GACATTCTTT CACGAATCTA TGGCGTCGCT GAAATCACCC CGAGGGTACA GCAGCGTAAA CCGCCGTTTC CTTTCACGAC ATCGCTTCTG CAGCAGGCCG CGTCAAACCA GCTCGGATTC GGCTCAAAAA AGACCATGCG TGTCGCGCAG CAGCTCTACG AAGGTATTGA TCTCGGCCCT GAAGGCGCCA CCGGCCTGAT CACCTATATG AGGACAGACT CTACCAGGGT CAGCGGTGAA GCTGTAGAAC AGGCTGAACG CTTCATCACG CAGCACTTCG GCCCTGAGTT TACAGGCGGC GGCCAGGCAG CAAAGAAAGG AAAAAAAACA CAGGACGCTC ATGAAGCTAT CCGGCCAACC GGGGTTCCCC GTACCCCGGA AACGATGAAA CCGTTTCTTT CTTCGGATCA GTACAAGCTC TACGAGCTGA TATGGAAAAG GTTTCTGGCT TCACGTATGG CGCCGGCAAA AATTGAACAG ACACGCGTGG ATGTCGCCGA CCACGAGAAA CAGTTTATCT TTCGCGCAAG CGGAAGCAAC GTGCTTTTTC CAGGCTTTCT GAAAGTCTAC AACGAGCAGA AAGAACTTGA CTACGAGGCA CGGAAATCAA CCCGTGAAGA TGAGGAAAAA GAGCAGATAG TCAAACTTCC CCGAAATCTG ACGGTGAATG AAAAGCTGAC TCTGGATACT CTTGACAAAA AACAGAGTTT CACCCGGCCG CCCGCACGAT TCACCGAGGC AAGTCTTGTC AAGGAACTTG ATAATTACGG TATCGGCAGA CCCTCAACCT ATGCAGGCAT CTTCTCGACG CTGCAGGATC GGAGGTATGT GGAATTAGAG AAGAAAAAAA TCATTCCGAC CGAGTTGGGA AAAGATGTAT CGATGATCCT TGTCGCCAAC TTTCCTGACC TTTTCAATGT GACGTTTACC GCCCACATGG AAAACGAGCT GGACAAGATT GCCGCGGGAG ATGATGAGTA TGAACAGGTT CTCGACTCCT TCTACAAGCC TCTTGAATCA GCTCTGAGCG TCAGAAAAAA CGATCCTCTT CTCCCTCAGA ACACCGATGC GGAAACCTGC GACAAATGCG GTAAGGGAAA AATGATAATC AAGTGGACCG CCAGCGGTAA ATTTCTCGGG TGTTCCTCCT ATCCTGCATG CAAAAACATC AAACCGCTCG CATCGTCCAG GGTCCGCCCG AAGGAAACCG GTATAAAATG CCACGGGTGT GAAAACGGAA GAATGGTTCT GAGAAACGGC AGGTTCGGCC CGTTCCTTGC CTGCACCGGC TACCCTGACT GCAACACGTT GCTGAAACTT GACAAACAGC GGAAAATAGA GCCCCCCAAA ACCCCACCGC TTGAAACCGA CCTGGCGTGC CCGAAATGCG GCGCGCCGCT TTACCTGAGA ACCGGAAAAA GAGGGTTGTG GCTCGGATGC TCGAAGTTCC CGAAATGCAG AGGGAGACAG GCCTGGGGGC AGCTCGATCC GGCCATACAG CATCACTGGC AGGAAATTAT GGAAAAACAT CAGGGAGAGC ATCCTTCTGT GACCATTCGC ATGGTTGACG GCACACCGGT CAACATGCAA CTGACCATCG ATGACATCAT ATCCCAGGCT GAGGAGAACG GACTGGTGGA GATTGAAAAC AATGAGGAGC AGCCGGTGGG CTCACCAGTC ACCAGTAGGC AGTAG
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Protein sequence | MASSPASSSA KGKTLIVVES PSKAKTINKY LGSDYLVFAS VGHIKDLPKK EIGLDFDNNY EPRYEVISGK EKVVRQLKKL AGQANDILIA TDPDREGEAI AWHIANEVDA AQKPVHRVLF NEITKKAILE AINDPLQIDY RLVRSQQTRQ GLDKIVGYKI SPFLWNVVMR GLSAGRVQSV SLRLICEREA EIDKFEPKEY WTIFADFTTG SGETFSTKLV RIDSNKAEIT NQSDAEKTAS DILSRIYGVA EITPRVQQRK PPFPFTTSLL QQAASNQLGF GSKKTMRVAQ QLYEGIDLGP EGATGLITYM RTDSTRVSGE AVEQAERFIT QHFGPEFTGG GQAAKKGKKT QDAHEAIRPT GVPRTPETMK PFLSSDQYKL YELIWKRFLA SRMAPAKIEQ TRVDVADHEK QFIFRASGSN VLFPGFLKVY NEQKELDYEA RKSTREDEEK EQIVKLPRNL TVNEKLTLDT LDKKQSFTRP PARFTEASLV KELDNYGIGR PSTYAGIFST LQDRRYVELE KKKIIPTELG KDVSMILVAN FPDLFNVTFT AHMENELDKI AAGDDEYEQV LDSFYKPLES ALSVRKNDPL LPQNTDAETC DKCGKGKMII KWTASGKFLG CSSYPACKNI KPLASSRVRP KETGIKCHGC ENGRMVLRNG RFGPFLACTG YPDCNTLLKL DKQRKIEPPK TPPLETDLAC PKCGAPLYLR TGKRGLWLGC SKFPKCRGRQ AWGQLDPAIQ HHWQEIMEKH QGEHPSVTIR MVDGTPVNMQ LTIDDIISQA EENGLVEIEN NEEQPVGSPV TSRQ
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