| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_2228 |
|---|
| Symbol | |
|---|
| ID | 6375922 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | - |
|---|
| Start bp | 2413701 |
|---|
| End bp | 2415044 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642684715 |
|---|
| Product | (dimethylallyl)adenosine tRNA methylthiotransferase |
|---|
| Protein accession | YP_001960614 |
|---|
| Protein GI | 189501144 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.696986 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATAGTA TTATCAAAGG GAACGTACTT CAGATGACGA AAAAAGTGTA TATCCGAACC
TTCGGCTGCC AGATGAATCA GGCCGATACG GAGATAATTA CAGCGTTGCT GCAGGATGAG
GGGTATGTTA TGACGGGATC GGAAGAGCGT GCCGATCTGG TGATACTCAA CACCTGTGCC
GTGAGGGAGA ATGCCGTTGA AAAGATTCTG CATACCCTGG ACCATATGAA AGGAAAACGA
CGGTCGCGAC CGGGGCTGCT TGTTGGCGTG ATCGGTTGTG TTCCGCAGTA CTACAGGGAA
AAGATGTTCG GGATGGCGGA CGGTATCGAT TTTCTCGCCG GCCCTGATAC CTACCGTCAG
CTTCCCGCGA TGATAGCAAA TGCCGGGCAG GGGATTCGAG GAGCTGATTT CGGATTTTCT
TCTGATGAAA CCTATTGCGG GATCGAACCG GCCCGTTCAG GCACGATCAG TGCGTTTATT
CCCGTGATGC GGGGCTGCAA CAACAGGTGT GCGTTCTGCG TGGTGCCGTT TACCAGGGGA
AAGGAACGGA GCCGTCCATT TCGCTCTGTA CTTGAAGACG TCGGGCGCCT TGCCGCGTCC
GGCTACAAAG AGATTACTCT GCTCGGACAG AACGTTAATT CCTATAGTGA TGATGAGGCT
GCGTGTGATT TTACTGAACT GCTTGACAGG GTGGCTGTTG CAGCAGAAGG AGTCCGTATC
AGGTTTACTA CCTCCCACCC CAAGGATATT TCCGAATCAC TCGTGCGGGT GATTGCGGCC
CGTAACAATA TCTGCAACGC TATTCACCTC CCCGTTCAGT CCGGCTCAAC CAGAATGCTC
AAACTGATGA ACCGGGGGCA TACAAGGGAG GAGTACTTCG AGAAGATCGC CATGATACGC
AGTGCTATTC CCGGGGTCAC GGTGTCGACA GATCTGATAG CGGGGTTCTG CGGTGAAACG
CTGGAAGATC ATCAGGCCAC GCTGAGCATG ATGGAGGACG TACGATTTGA TTTTGCCTAT
ATGTTTTACT ATTCGGTGCG ACCCGGTACC TATGCGGCGA AACATCTTCC TGACGATGTG
CCCGAAGAGG AGAAAAAACG CCGTCTCGAA GAGATAATTG CTCTGCAGGG CAGCATTTCA
GGGGAACGCA ATGCCGCTGA GGTTGGCGCT GTTGTGGAGG TGCTTGCCGA ATCGGAGAGC
AAGCGGTCAA GCGAGATGCT GATGGGAAGA ACAGATACCA ACCGGGTTGT CGTGTTCGAC
CGCCATGGGT TCGAGGCAGG CGATCTGGTG AAGGTGCGTA TCAGGTCGTC AACTCCGGCA
ACGCTTATCG GCACACCTGC ATGA
|
|---|
| Protein sequence | MNSIIKGNVL QMTKKVYIRT FGCQMNQADT EIITALLQDE GYVMTGSEER ADLVILNTCA
VRENAVEKIL HTLDHMKGKR RSRPGLLVGV IGCVPQYYRE KMFGMADGID FLAGPDTYRQ
LPAMIANAGQ GIRGADFGFS SDETYCGIEP ARSGTISAFI PVMRGCNNRC AFCVVPFTRG
KERSRPFRSV LEDVGRLAAS GYKEITLLGQ NVNSYSDDEA ACDFTELLDR VAVAAEGVRI
RFTTSHPKDI SESLVRVIAA RNNICNAIHL PVQSGSTRML KLMNRGHTRE EYFEKIAMIR
SAIPGVTVST DLIAGFCGET LEDHQATLSM MEDVRFDFAY MFYYSVRPGT YAAKHLPDDV
PEEEKKRRLE EIIALQGSIS GERNAAEVGA VVEVLAESES KRSSEMLMGR TDTNRVVVFD
RHGFEAGDLV KVRIRSSTPA TLIGTPA
|
|---|
| |