| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_2184 |
|---|
| Symbol | |
|---|
| ID | 6375878 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | - |
|---|
| Start bp | 2361749 |
|---|
| End bp | 2362789 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642684671 |
|---|
| Product | TIM-barrel protein, nifR3 family |
|---|
| Protein accession | YP_001960570 |
|---|
| Protein GI | 189501100 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.067096 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.397805 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAATAG GAAGTCTGGA CATAGAGCGC CCGGTGATTC TCGCTCCCAT GGAAGATGTT
ACCGACAGAT CTTTCAGAAA GATCTGCAAA CGGTTTGGTG CAGATATTGT CTATACTGAG
TTTGTCAGCG CGGAGGCTCT CCGCAGAGGT GTCGGGAAAT CTATTCAAAA GATGCTTTTC
GAGGAGAGCG AACGTCCAGC AGTCATTCAG ATCTTCGGAA ATTCCGGGGA GGCAATGGCC
GAGGCGGCGG TCATCGCCGC ATCGGCCAAA CCGGACTACC TTGATATCAA TTTCGGATGT
CCTGCCAAGA AGGTCGCAGG TAAAGGGGCG GGAGCCGCTT TGCTCAGGGA ACCCGAAAAA
ATGGCGGCTA TTACAGCTGC GGTGGTCAAG GCGGTATCGA TTCCCGTGAC GGTGAAAACC
CGGATCGGCT GGGACAGGGA TTCAGTCAAT ATTCTTGATA TTATCCCCAG GCTTGAAGAT
GCGGGTATTG CCGCGATTGC CGTGCATGGT CGAACACGAA GCGAAATGTA CAAAGGAAGA
GCTGACTGGG ACTGGATTGC CAGAGTGAAG GAGCATGCAA AGATTCCAGT TATCGCCAAC
GGTGATATCT GGTCGCCTCA GGATGCTCTT GCCATGTTCA GCCACACCGG AGCGGACGGT
ATCATGATAG GGCGTGGCGC AATCGGTAAT CCGTTTATAT TCAGGCAGGT GAAGGAACTG
CTGCAAGGCG GCGCCGTGAC GACGTTGCCG GATTTCAGGG ACAGGATTTC GGTAGCTATA
GAGCATCTCT CGCTTTCCGT GGAGCACAAG GGAGAAAAGT ACGGAACTCT TGAAATGAGA
AGACATTATT CCACCTACCT TAAAGGGCTC CCGAGGGTTT CCAGAGTCAG GGACAAGCTT
GTCAGGGAGG AAAAGTGGCA GCAGGTTATC GAGATACTAA GGGCGTACGA GGTTGAGTGT
GAGGGTTACG AACGTGAGGG AAAAATCCGG GAGTATGCTG AATTTCTCAA TGATCATTCG
AAGCGTCTGG TGCTTAAGTG A
|
|---|
| Protein sequence | MRIGSLDIER PVILAPMEDV TDRSFRKICK RFGADIVYTE FVSAEALRRG VGKSIQKMLF
EESERPAVIQ IFGNSGEAMA EAAVIAASAK PDYLDINFGC PAKKVAGKGA GAALLREPEK
MAAITAAVVK AVSIPVTVKT RIGWDRDSVN ILDIIPRLED AGIAAIAVHG RTRSEMYKGR
ADWDWIARVK EHAKIPVIAN GDIWSPQDAL AMFSHTGADG IMIGRGAIGN PFIFRQVKEL
LQGGAVTTLP DFRDRISVAI EHLSLSVEHK GEKYGTLEMR RHYSTYLKGL PRVSRVRDKL
VREEKWQQVI EILRAYEVEC EGYEREGKIR EYAEFLNDHS KRLVLK
|
|---|
| |