| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_2159 |
|---|
| Symbol | |
|---|
| ID | 6375853 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | + |
|---|
| Start bp | 2336845 |
|---|
| End bp | 2338434 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 642684646 |
|---|
| Product | CRISPR-associated protein, Cse1 family |
|---|
| Protein accession | YP_001960545 |
|---|
| Protein GI | 189501075 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02547] CRISPR system CASCADE complex protein CasA/Cse1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0719403 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCCTG AAAATTGTTT CAATTTGATT GACGAGCCAT GGATACCCGT CATTGACAAA
GGAAGAATAA GCTTGCGACA GGTATTCAGC GAACCAGACA ATCGTGCTCT TGGTGGAAAT
CCACTGCAAA AACTGGCGTT GACAAAGCTA CTGCTTGCAA TTGCTCAGGC GACCTGTACC
CCTGAAAATG ATGAGATTCA TGCATCAATG GAGAGTTCGG AGCTTGCCCG CAAAAGTATT
GATTATCTCG ATAAATGGTA CGATCGGTTC TGGCTCTACG GAGAGAAACC GTTTCTGCAG
ATGTCCGCTA TTCACGGACT CATTGAACAA CGGAAACGGA AATATCTCAA TGCAGCCAAA
AAGGACTCTG TCCGTAGAAC TGCTGAAGTC AATGCTTTGC CAAAGTCTCT TGGTATGGGT
TTCTATCCGG ACATGCCTTC TGAAAATAAC ACCATTCTGA CCCAGTATCA GATCCCCAAG
GCCCTTGCGG ATTCCGATAA GGCATTATTT ATCGTTTCGC TCATGAACTT TGCGTTGGGC
GGAAAGAGGG TTGAAAAAAA CCTAGATAAC CAGTTGATGC TCGGTTATGC GGGGAAAACA
CCCTCAGCAA AATCGGCACC AAGTCTTGGT AATTACATCG GATATCTCCA TTCCATTCTT
GTTGGAGAAA CCCTTGCTGA TACCCTACTG ATAAATCTTT TATCACACGA GCGAATACAG
GCAAATGTAT ACTGGAAAAG CGGACTAGGA AAGGCCCCCT GGGAAGAAAT GCCGACAGGT
GTTGCCTGCC CGATAGCTAC AAATCTGAAA AGCTCCTATA TGGCTACTCT GGTCGCCATG
TCTCGTTTTG TCCTGTTGCA AGGTGACGGC ATCTATTATG TGGAAGGCAT ACAATATCCG
AGTCACAAAG AGGGGTGGAG AGAGCCAAGT ATGGCTGTAA ATGCACAGGC TGCCACTCCG
AAAATCAAAT GGATTGATCC CAACAAACGT CCATGGAGGG AACTTGTTTC GTTACTTGCT
TTTATGGATG GTGGTGGATC TCAGGGTTAT GAGTGCCAGT TTATCAAGTA TGGTCTAAAA
AATTTTGGTG ACCGTTTCAA GCGAATTGGT GTCTGGTCAG GTGGACTTAG GGTAAGTACG
AATCGTTGCG ATCAGTCAGT AAAGCAGGAT AATGACTTTG TCGAATCTCT CGTTTTTCTT
GAAAGCAAGA TTATCGGTCA GCTTTGGTAC CAGCAGTTTA AACTTGAAAT GGTTGCTTTG
AACAAGATCT CAGATACAAT TTTTACTGCA ACGGTAGCAT ATTATCAATC GCTGGTGGAA
AAAATGGATA AGAAAAAGGC GATAAAAAGC TTTAAAAATA TCGCCGATAA AGCAACATCC
TTGTTTTGGG AGCTTTGTGA ACGTCATTTT CAGGAACTGG TTGATGCCTG TGAACCACCG
TATGAGACAA AAAAAACAAG AATAGTGTTC GCTCAAGCGG CATTAAAAGC CTTCGATACT
TTTTGCCCCA AAGAAAGTGC CCGGCAGATT GATGCATGGG CAAAAAGTAG ACCGAATCTC
ATCAACTATC TCAATTCGGA AAACAAGTAA
|
|---|
| Protein sequence | MIPENCFNLI DEPWIPVIDK GRISLRQVFS EPDNRALGGN PLQKLALTKL LLAIAQATCT
PENDEIHASM ESSELARKSI DYLDKWYDRF WLYGEKPFLQ MSAIHGLIEQ RKRKYLNAAK
KDSVRRTAEV NALPKSLGMG FYPDMPSENN TILTQYQIPK ALADSDKALF IVSLMNFALG
GKRVEKNLDN QLMLGYAGKT PSAKSAPSLG NYIGYLHSIL VGETLADTLL INLLSHERIQ
ANVYWKSGLG KAPWEEMPTG VACPIATNLK SSYMATLVAM SRFVLLQGDG IYYVEGIQYP
SHKEGWREPS MAVNAQAATP KIKWIDPNKR PWRELVSLLA FMDGGGSQGY ECQFIKYGLK
NFGDRFKRIG VWSGGLRVST NRCDQSVKQD NDFVESLVFL ESKIIGQLWY QQFKLEMVAL
NKISDTIFTA TVAYYQSLVE KMDKKKAIKS FKNIADKATS LFWELCERHF QELVDACEPP
YETKKTRIVF AQAALKAFDT FCPKESARQI DAWAKSRPNL INYLNSENK
|
|---|
| |