Gene Cphamn1_1982 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphamn1_1982 
Symbol 
ID6375674 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium phaeobacteroides BS1 
KingdomBacteria 
Replicon accessionNC_010831 
Strand
Start bp2127883 
End bp2131404 
Gene Length3522 bp 
Protein Length1173 aa 
Translation table11 
GC content55% 
IMG OID642684473 
Productalpha amylase catalytic region 
Protein accessionYP_001960374 
Protein GI189500904 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0366] Glycosidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.112742 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGAAC AGACAGATCT TGCACTGACC CGTACTCCTC TGCAGAAGGA ACATTTTTAT 
ATCTCCCGTG AGGCACTTGA GAGCATAGCG CTTCCTGAAG AGTGGCTTCC TGAAATCCCG
ACAGATAAGC GTGTCGCTCT CAAGCTGGCA GAAGAACAGA CAAACAGGAT CAACAGGAGA
CTGCGACAGC GTTACGGCGA TGATGTCCGG CTGCTGCTTC CCGCGCAGTT TCACGCCATG
AAACTGCTGC ACGCAGCCGC TCACCTGATC ATGAGCCGTA TCGTCCTGAA AAACAACCCC
GCTTTGCCGG GAGAGGTTGA AATGGCTGCC GGAAAAAAAC TGGACGAAGC CTCGCTCTCC
GCATATATGA AAGATTTTAT CACCCTGTTT CCTCCTCCGG GAGTGTTCCA GGGTAAGGTG
ACTGATGGGG CGTATCTGGC TAAAGCTGTG AACCGGCACG TTGTACTGGA AGAAAGTCTT
TTTGTCTGGC TGCAGAACCA GAATCCCGCG CTTGACCAGT TCGGCTTTCT GCTTTCCGAT
ACAGAGCTCA GGGAGAGCAC GTCATACCAG ACCGTGGTGA AGACATTTCT GCATTCGCTC
AAGGCAATGG GCCCGATTGG CCCGGAAAAT ATCGATCCAG CCGAGCTGCT CACCCGACCG
ATTCGCCATA GTCCGAACTC GCTACTCGAG CAGCTGCGGT ATATTTCCAT GCACTGGGGC
GCGCTCCTCG AAGGCACTCC CCTTCTGGAA ATGATCGACG GCAGCATCAG CCTTATACAG
GACGAAGATA CCTGGCTTTT CTTTGAAAAG ACCGGCCGTG ACAGCATGGA AAAGCATGGC
ACCTTTTTTG AAAAACATGC CCAGGCGCCA TCCTACAGCG ATCTCGAGGA CGCACCGGAG
AACTATTCGG TCGACTCCTC ATGGATGCCG GAAGTGATCA TGCTCGCCAA AAGCACCTTT
GTCTGGCTTG ACCAGCTGAG CAAAATGTAC AAACGACCGA TCCGGCGGCT GCAGGATATT
CCGGACAGTG AACTTGACGC GATCGCCGGA AGGGGATTTA CCGCGCTCTG GCTTATCGGC
CTCTGGGAAA GAAGTCCCGC GTCAAGAAAG ATCAAACAGA TGCAGGGCAA TCCTGATGCC
ATTTCATCGG CTTATGCGCT GGACAGCTAT GAGGTGGCCG CGGAACTGGG CGGTTACGAC
GGCTATCTGA GCCTCCGCCA TCGGGCACTG CAGCGGGGTG TCCGGCTCGC GAGCGATATG
GTACCCAACC ATACCGGCCT GGACTCGGTG CTGGTGAAGG AGAAACCGGA ATGGTTTGTC
AGCCGCCACG AGCCCCCGTT CCACGCCTAC TCCTATGACG GCCCGAACCT GAGCAGTGAT
CCCCGTTACG GCATCTATAT CGAGGATGGG TACTGGGATC GATCGGACGC TGCCGTGACG
TTCAAGCGGG TGGATTATCA AAACGGTGAT ACGCGATACA TCTATCACGG GAACGACGGA
ACCACCATGC CCTGGAACGA CACCGCTCAG CTGAACTTTC TGAGCGGTGA AGTTCGCGAG
GCGGTGATTC AACAGATACT GCATGTCGCG AAGATGTTCC CGGTGATCCG TTTCGACGCG
GCCATGGTGC TCGTCAAGAA ACATATTCAG CGGCTATGGT ACCCCCTTCC GGGACATACG
GCGGGCATAC CGTCGAGAAG TTCGAGCGCG ATGAGTATGG AGGATTTCAA CAAATTCATT
CCTGAAGAGT TCTGGCGGGA GGTTGTCGAC CGCATCCACG CGGAAGCTCC CGACACGCTG
CTGCTGGCCG AAGCGTTCTG GATGCTCGAG GGGTACTTTG TACGGACCCT CGGCATGCAC
AGGGTCTACA ACAGCGCGTT CATGCACATG CTGAAAAAAG AGGATAACGC TGGATACCGC
TACCTGATCA AGAACACACT TGAATTCGAC GCCGGGATTC TCAAGCGATA TGTGAATTTC
ATGAACAACC CTGACGAGGA TACGGCGATA GAGCAGTTCG GCAAGGACGA CAAGTATTTC
GGCGTGTGCG TGATGATGGT GACCATGCCG GGTCTTCCGA TGTTCGGACA CGGCCAGGTG
GAGGGGTTCA GCGAAAAATA CGGAATGGAA TACGCCCGGG CATACCTTGA CGAGAGTCCG
GACGAGGGAC TGATCAGAAG GCATGAAAAG GAGGTTTTTC CGCTCCTGAA AAAACGCTAC
CTCTTTGCCG AAGTGGAACA CTTCTTCCTC TACGATGTCT ACTCCGACAA CGGTTCGGTG
GAAGAAAACA TCTTCTGCTA CTCCAACCGT TCAGGTGACG AACGCACTCT GGTCGCCTAC
AATAACGGGT GGGAAGAACG CAAGGGGTAC GTCAACAGTT CCGTCGGGTT CAAGACCGGC
AACGGTATCG AGCAGCGCTC CCTGTGCGAC GGCCTCGGGC TGAGTCATGA ACATGACACC
TACCTGGTTT TCAGGGATCA TGTTTCTAAC CTTGAATTTA TCCGGAAGGT CAGTGACCTG
CGTGAACAAG GGCTCTCTCT TATTCTTGGA GGGTACCGGT ACAATGTATT CCTTGATTTC
AGGGAAGTCC GTCCTTCCGG ACTGATGCCC TACGATCGCC TCTGCGACGA ACTGAACGGC
GCGGGCCTCG GCTCAATCGA CAGGGCCGTG CTTGAAATGA GCCTAGCGCC GCTGCACGGA
AAGATCGCCC GCTTCTGCTC AGAAGAGAAC CTCGATCTGC TGCTCGACGA GACAGTAAGC
GCCACACAAC GAAAAACGCT CTTCGAAGCC TCCCTCACAG ACCTGCTCCG GCACATCTCC
GATGAGTACG GAACACTGAC CGGACAGAAG ATCACCCTGC CGGACACCCT TGTCAGAAAA
GCCTGCGACA AGATCGAACG GGCCGCCTCA CTCGAGACTC TGTTGCGCGG GACGGACAGC
GCTGCTGATC TGTCTGCCAC TCTCGGGATG CGGAAGAAAC AACCGGACAG CTTCAGCCAT
GCTGCAATGC TCTGGGTTAT CATCGAGTCG ATCGAGCGTC TCTTTCAGAG CAATCATCTG
GTCTCACAGG GAGTTCTCGA CGACCTCCTT CTCACCGAAC CGCTGACCGG GGCGTTTGGT
GAAAACAGCA GACTGAAAGA ACTGCCGGTG GAACATCTGG CCGCTCTTTT CAGCAGTCTC
CTCTCCCTGA AGATGCCTGT CGCGACGGTA AAAAATCCGG AAAAGTATCT CTCCACCATG
CTCGAACGAC TTCTCGACAG TAGCGGCACG ATACACACCA GCACATTTCT TGTGATCAAG
GAACAGCATA ACAAACGCTG GTTCAGGGAA TCCCGGTTCA CGCTGATGAT CTCCTGGCTG
TCTGCCGTCA CCCTCATACA GACATGGCCG GAAAAGAAAA AGCACGAAAA GCCGATCCGC
CCGACATCAA TCACAGCATG GATCGAGGCC ATGGAAACTA TCCATGAAGA TGCCTTCATC
GCCGGATTTG AAACCGGAGC GTTCTTGAAA ATAAGGGGGT AA
 
Protein sequence
MTEQTDLALT RTPLQKEHFY ISREALESIA LPEEWLPEIP TDKRVALKLA EEQTNRINRR 
LRQRYGDDVR LLLPAQFHAM KLLHAAAHLI MSRIVLKNNP ALPGEVEMAA GKKLDEASLS
AYMKDFITLF PPPGVFQGKV TDGAYLAKAV NRHVVLEESL FVWLQNQNPA LDQFGFLLSD
TELRESTSYQ TVVKTFLHSL KAMGPIGPEN IDPAELLTRP IRHSPNSLLE QLRYISMHWG
ALLEGTPLLE MIDGSISLIQ DEDTWLFFEK TGRDSMEKHG TFFEKHAQAP SYSDLEDAPE
NYSVDSSWMP EVIMLAKSTF VWLDQLSKMY KRPIRRLQDI PDSELDAIAG RGFTALWLIG
LWERSPASRK IKQMQGNPDA ISSAYALDSY EVAAELGGYD GYLSLRHRAL QRGVRLASDM
VPNHTGLDSV LVKEKPEWFV SRHEPPFHAY SYDGPNLSSD PRYGIYIEDG YWDRSDAAVT
FKRVDYQNGD TRYIYHGNDG TTMPWNDTAQ LNFLSGEVRE AVIQQILHVA KMFPVIRFDA
AMVLVKKHIQ RLWYPLPGHT AGIPSRSSSA MSMEDFNKFI PEEFWREVVD RIHAEAPDTL
LLAEAFWMLE GYFVRTLGMH RVYNSAFMHM LKKEDNAGYR YLIKNTLEFD AGILKRYVNF
MNNPDEDTAI EQFGKDDKYF GVCVMMVTMP GLPMFGHGQV EGFSEKYGME YARAYLDESP
DEGLIRRHEK EVFPLLKKRY LFAEVEHFFL YDVYSDNGSV EENIFCYSNR SGDERTLVAY
NNGWEERKGY VNSSVGFKTG NGIEQRSLCD GLGLSHEHDT YLVFRDHVSN LEFIRKVSDL
REQGLSLILG GYRYNVFLDF REVRPSGLMP YDRLCDELNG AGLGSIDRAV LEMSLAPLHG
KIARFCSEEN LDLLLDETVS ATQRKTLFEA SLTDLLRHIS DEYGTLTGQK ITLPDTLVRK
ACDKIERAAS LETLLRGTDS AADLSATLGM RKKQPDSFSH AAMLWVIIES IERLFQSNHL
VSQGVLDDLL LTEPLTGAFG ENSRLKELPV EHLAALFSSL LSLKMPVATV KNPEKYLSTM
LERLLDSSGT IHTSTFLVIK EQHNKRWFRE SRFTLMISWL SAVTLIQTWP EKKKHEKPIR
PTSITAWIEA METIHEDAFI AGFETGAFLK IRG