| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_1921 |
|---|
| Symbol | |
|---|
| ID | 6375613 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | - |
|---|
| Start bp | 2084513 |
|---|
| End bp | 2086009 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642684415 |
|---|
| Product | transposase, IS5 family, putative |
|---|
| Protein accession | YP_001960316 |
|---|
| Protein GI | 189500846 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.2077 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACCAAC AGAAGTTTCA GCAGCTCACG TTCGAAAATT TCCATCTGCC GTTCGGCGGT
AAACTCGATC CGGAAAACCG GTGGGTGAGG CTCGCTGACG TAATTCCCTG GCACGTCGCC
GAAACGATGT ATGCCAAAAA CTTCATGTCA AAACGGGGTG CTCCGGCACT GACGGTTCGT
ATGGCGCTGG GGTCTTTGAT CATCAAGGAG AAACTCGGCC TTTCGGATAT CGAGACGGTC
GAACAGATCA AGGAGAACCC GTATCTCCAG TACTTCATCG GTCTTGAATC GTTTCAGCAT
ATCGCGCCCT TCGACGCCTC GATGCTGACC CACTTCCGGA AGAGGCTGAA GCATACCGAT
CTCGGTGCGC TGCAGGAGGA ACTCCTGCAA CGCCATCTGG CTGAAGAGCG AAAGAGGGCT
GAGGAGAAGA AAGAGAACCA GAATGGCGAC GACGATGGAA ACGAGGGTCC TGCCAATAAA
GGCAAGCTCA TCGTCGATGC CACTTGTGCG CCAGCAGATA TCGCCTATCC GACAGATATC
GGCTTGCTGA ACGATGCTCG GGAAAAGACC GAGCGGATCA TTGACGAACT GTATGCCATG
CACCCGGAAG GAGTGAGCAA GCCGAGGACG TACCGTAAGA GGGCAAGGAA GGATTTTCTT
GCCCTCGGCA TGAAAAAGAA GTTGTCGAAG AAAGCGCTCC GCAAGGGGCT TGGCAAGCAA
CTGCGATACC TCAGGAGAAA TCTGGAGCAC ATTGCCATGC TATCTGGTTC AGTGCCGCTG
ACGGTCCTGT CAGCACGTTG GCATCGGGAC CTGCTGGTGA TCGGTGAATT GTACCGGCAG
CAGGTGGAAA TGTGGCAGAG CGGCAAGAAG AACATCAGCG ACCGCATCGT CAGCATCAGC
CAGCCGCACG TCAGGCCGAT CGTACGGGGC AAGGCCGCAG CCAAGACAGA GTTTGGCATG
AAGCTCTCGA TCAGCGTCGT CGACGGCATC AGCATGCCGG AGAGGATGAG CTGGAACGCC
TACAACGAAG GCTGCGATCT GGTGCGAGAC ATCGAGCGGT ACCGTGAGCG ATACGGCCAC
TATCCTGAAT CGGTCCATGC CGACAAGATC TACCGGACGC TGGCCAACCG GATGTGGTGC
AAGGCTCGAG GGATCCGGCT GAGCGGCGTG CCGCTCGGTC GGCCCCCGAA AGACGTTGAG
AAGAACCGGG CCCGCCGGCG CCAGATTAGG GAAGACGAAG GCATCAGGAA TGCAGTTGAA
GGCAAGTTCG GCCAAGCGAA GCGCCGATAC GGACTGGGCC GGGTGATGGC CAGGCTGGCT
GAAAGCAGCC TGAGCGCGGT CTCAATCACA TTCCTCGTGA TGAATCTGGA CCGGGTGCTC
GCCGCTCCTT TTTTGTGCCT GTTTGAATGG CTCTTTTTGG AGCTTGACGT AATCAGAAAT
TTGTTCGCGT GGTCATCTCC CCGAGCGGCG ATTGGGTGCC GCGGGGCGAT GGCTTGA
|
|---|
| Protein sequence | MYQQKFQQLT FENFHLPFGG KLDPENRWVR LADVIPWHVA ETMYAKNFMS KRGAPALTVR
MALGSLIIKE KLGLSDIETV EQIKENPYLQ YFIGLESFQH IAPFDASMLT HFRKRLKHTD
LGALQEELLQ RHLAEERKRA EEKKENQNGD DDGNEGPANK GKLIVDATCA PADIAYPTDI
GLLNDAREKT ERIIDELYAM HPEGVSKPRT YRKRARKDFL ALGMKKKLSK KALRKGLGKQ
LRYLRRNLEH IAMLSGSVPL TVLSARWHRD LLVIGELYRQ QVEMWQSGKK NISDRIVSIS
QPHVRPIVRG KAAAKTEFGM KLSISVVDGI SMPERMSWNA YNEGCDLVRD IERYRERYGH
YPESVHADKI YRTLANRMWC KARGIRLSGV PLGRPPKDVE KNRARRRQIR EDEGIRNAVE
GKFGQAKRRY GLGRVMARLA ESSLSAVSIT FLVMNLDRVL AAPFLCLFEW LFLELDVIRN
LFAWSSPRAA IGCRGAMA
|
|---|
| |