| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_1916 |
|---|
| Symbol | |
|---|
| ID | 6375608 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | - |
|---|
| Start bp | 2080569 |
|---|
| End bp | 2081561 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 642684411 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_001960312 |
|---|
| Protein GI | 189500842 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.215962 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTAAACA GGGTGTTATT AATAGGTGCT TCCGGTTTTG TTGGGACACG ACTGATAGAT
GAAATAGGAG AAGAACGGTG CGTTAATCTT GATAAACAGC ACAGTTCTCG TTACGATAAT
ATCACAGTCA TTCAGGATAT ACGTAATGAA GGTATTGATG GAGCTATTTC TCATCAACCT
TCTGCCGTTG TTTTGTTAGC AGCTGAGCAT AGGGATGATG TTTCACCGGT GTCCTTGTAT
TATGATGTCA ATGTCCAAGG CACAATGAAT GTTCTCGATG CGATGGATAA AAAAGGGATC
AAGAGCATTG TGTTTACCAG TTCGGTTGCT GTGTATGGAT TGAATAAAGA GAATCCTAAT
GAAACGCATC GGGCTGACCC ATTCAACCAT TATGGGAAGA GTAAGTGGCA AGCTGAAGAG
GTGCTTCGAG AATGGTATCA GAAAGATCCT GAAAACCGTT CTTTATCAAT TATCCGGCCT
ACAGTAATTT TTGGAGAAGC CAATAGGGGA AATGTGTACA ATCTTCTACG GCAAATTGCT
TCGGGTAAGT TCTTGATGAT AGGTAAGGGT GAAAACAAGA AATCCATGGC TTATGTGGGG
AATGTCGTAG CGTTCATTAA ATATCTGATC GATAACGACC GTCCTGGGTA CAGGGTGTTT
AACTATGTCG ATAAGCCTGA TTTCAACATG AACGAGCTTG TCTCACAGGT CAGGAGTGAT
CTAAAACAAA ATGGTCGGTT GATCAGGATC CCGGAAGTTG TTGGTATGCT TGGAGGGTTC
GGGTTCGATA TTCTTGCAAA AGTCACGGGT AAAAAGCTTC CGATCAGCAG TGTACGGGTC
AAGAAGTTCT GCGCGACAAC GCAATTCTCT GCAGACAAAC TTGATGTAAG CGGTTTTCAG
AGACCGTTTA CTCTTGAAGA AGGGCTTGAG CGCACTTTAC GTTATGAGTT TATAGAAAAC
CATGATGATA AACCGGTTTT CTTTACTGAG TGA
|
|---|
| Protein sequence | MLNRVLLIGA SGFVGTRLID EIGEERCVNL DKQHSSRYDN ITVIQDIRNE GIDGAISHQP
SAVVLLAAEH RDDVSPVSLY YDVNVQGTMN VLDAMDKKGI KSIVFTSSVA VYGLNKENPN
ETHRADPFNH YGKSKWQAEE VLREWYQKDP ENRSLSIIRP TVIFGEANRG NVYNLLRQIA
SGKFLMIGKG ENKKSMAYVG NVVAFIKYLI DNDRPGYRVF NYVDKPDFNM NELVSQVRSD
LKQNGRLIRI PEVVGMLGGF GFDILAKVTG KKLPISSVRV KKFCATTQFS ADKLDVSGFQ
RPFTLEEGLE RTLRYEFIEN HDDKPVFFTE
|
|---|
| |