| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_1882 |
|---|
| Symbol | |
|---|
| ID | 6375573 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | + |
|---|
| Start bp | 2042245 |
|---|
| End bp | 2043099 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642684378 |
|---|
| Product | endonuclease IV |
|---|
| Protein accession | YP_001960280 |
|---|
| Protein GI | 189500810 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0648] Endonuclease IV |
|---|
| TIGRFAM ID | [TIGR00587] apurinic endonuclease (APN1) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0101436 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTACA TCGGAGCACA TGTCAGTATT GCCGGCGGCA TTGAAAACGC CCCGCTCAGG
GCACAAGAGA TCGGGGCGAC CGCTTTTGCC CTGTTCACTA AGAACCAGCG TCAATGGAAA
GCTCCGGCTC TGACTGCAAA AACCATAGAG GCGTTCAGAG AAAACTGCGA GCGCTGCGGT
TACAGGCCTG AGCACATTCT GCCGCACGAC AGCTATCTGA TCAATCTCGG AAGTCCCGAT
GCGCAAAAAC TCGACCGCTC ACGCAACGCG TTTATCGACG AGATGCAGAG AACAGAAGCT
CTGGGACTGG TCCGGCTTAA CTTGCATCCC GGCAGCCATC TGAGAGAGAG CAGTGAAGAA
GCATGCCTTG AAACCATTGC AGAATCTGTC AATCTTGCGC ATGAAGCGAC GAATACGGCA
GTCGCGGTAC TGGAAAACAC CGCCGGTCAG GGATCAAACC TCGGGCACAC GTTTGAACAG
CTCGCCTTCA TCATTCAAAG AGTGCATGAC AAATCCAGGG TTGGTGTCTG CCTCGATACC
TGTCACCTTT TTGCAGCAGG CTACGATCTT CGCACTGAAG AAGCGGTCAA CGGAATGTTC
GAACTGTTTG ACGCGTCAAT AGGACTCCAC TACCTGAAAG GGATGCACCT TAACGACGCA
AAACCTGAAC TGGACAGCAG ACGTGACCGG CATGAGAGTA TCGGCAAAGG AAAGATCGGG
CTTGACGGGT TTGCAGCCAT CATCCGGCAT CCCGCGAGTG CGGAAATCCC CCTGATCCTC
GAAACTCCGC AACCCGAAAT CTGGAGTGAA GAGATCACCC TGCTCCGGAG TTTTGAAGAA
GCACAGAATT GTTGA
|
|---|
| Protein sequence | MRYIGAHVSI AGGIENAPLR AQEIGATAFA LFTKNQRQWK APALTAKTIE AFRENCERCG
YRPEHILPHD SYLINLGSPD AQKLDRSRNA FIDEMQRTEA LGLVRLNLHP GSHLRESSEE
ACLETIAESV NLAHEATNTA VAVLENTAGQ GSNLGHTFEQ LAFIIQRVHD KSRVGVCLDT
CHLFAAGYDL RTEEAVNGMF ELFDASIGLH YLKGMHLNDA KPELDSRRDR HESIGKGKIG
LDGFAAIIRH PASAEIPLIL ETPQPEIWSE EITLLRSFEE AQNC
|
|---|
| |