| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_1826 |
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| Symbol | |
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| ID | 6375517 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium phaeobacteroides BS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010831 |
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| Strand | + |
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| Start bp | 1980462 |
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| End bp | 1982441 |
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| Gene Length | 1980 bp |
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| Protein Length | 659 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 642684323 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001960225 |
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| Protein GI | 189500755 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.570269 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACAAT TCCATCCGGT TCCGCCAAAC GGCAAATACC CTTTTCTTTC AGCAATTGTT
TCTCCAGAAG ACCTGAAAAA ACATACCATC CATGATCTTC AGAAAATTGC GGATGAATGC
AGGTCATATC TTATCGATGT AGTGGCTGAG AACGGCGGGC ATTTCGGCTC GAGCCTCGGT
GTCGTAGAGA TGTCTGTGGC CATGCACTAT GTCTACAATT CCCCACACGA CAAAATAATA
TGGGATGTCG GCCATCAGGC CTATATCCAC AAGATCCTGA CCGGCAGAAA AGAGCTGATG
CACACAAACA GGAAATTCAA TGGCCTTGCC GGTTTCCCGA AAATCTCTGA AAGCGCTCAT
GACGCCTTCG GTACCGGCCA TGCATCGACA TCCATTTCTG CCGCGGCGGG AATAGCGGCG
GCAAAAAAGC TGTCAGGAAG TAACGACAAG GTTATTGCCG TTATCGGTGA CGGAAGTATG
ACCGGAGGAA TGGCATTCGA GGCAATGAAC CACCTCGGAG ATATCAAAAG CGACGTTCTT
GTTGTTCTGA ACGATAACCA GATGGCCATC TCCCCAAGCA CCGGAGGATT GAAAAATTAT
CTTGTCAACA TCACCCTGAA CAAAACATAC AACAAGGCCA GGAAATTCAT CTGGGACTCT
CTCTCTCTGC TCAATAACGA CCTTGGAGAA ACCGCCAAAA ACGCTGTGCG CAAAATTGAA
GACGGAATAA AAGCCGCCCT CACACCCGGT GCTTTTTTCG AAGCTCTCGG GTTCAGATAT
TTCGGCCCGA TAGACGGCCA CAACACGGAA CAGCTTGTCA AAGCGTTCAG GGAAATGCAG
GAACTGCCCC ACCCGAAGCT TCTGCATATC ATAACGACAA AAGGAAAAGG CTTTAAACCG
GCCGAAGACG ATCAGAGCAA GTGGCACGCA AGCAGCGGCG GCTTTGACAT TACAACCGGC
AAATCATTGA AAAAATCCGG AATTGCCCAA CCCCCGAAAT ATCAGGATAT TTTCGGCGCG
GCATTAGCCG AACTCGCCGA TTCAGACCAC AGGATCACAG GAATTACCGC TGCGATGTCC
AGCGGTACCT CTCTTGATAT TTTTCAGAAA GCTCATCCTG AACGTTTCTA TGACGTCGGG
ATCGCCGAGC AGCATGCCGT GACATTTGCC GCGGGAATGG CGGCAAACGG CTATAAACCT
TTTTGTGCCA TCTATTCCAC TTTTCTGCAG CGCGCCTATG ATCAGCTGAT TCACGATGTC
GCCCTTCAGA AACTTCCTGT CGTTTTCGCA ATCGACCGTG CTGGTCTTGT CGGAGAAGAC
GGCCCGACAC ATCACGGCTC ATTCGACCTC TCCTTTCTGC GCCCGATTCC CGGTATGGTC
ATCATGGCTC CCAAAGACGG ACAGGAACTC CGGGACATGT TGTACACAGC CTCGAAATAT
CAGAACGGTC CTGCGGCCAT CCGCTATCCG AGAGGACTCT CTTCAGAAAT CACACTCCGC
CCCGGCTTCC GGGAAATCGA AATCGGCAAG GGGAAAATTG TGCGTGAGGG TTCTTCTGTT
GCCATTCTTG CGATCGGCAC CATGGTGGAA AGAGCTCTTG AAGCGTCCTT GCTGCTTGAA
GAAAACGGTA TTGACGCACT TGTGGCCAAC ATGCGTTTTC TGAAACCTCT CGACACCGCA
CTGCTGGATG ACATTGCTGA AACCCACACC GACATAGTGG TACTTGAGGA AAACAGCATC
ATTGGAGGGC TTAACAGCGC GGTAAACGAC TATCTGCGCA GCAAAAGGCG TACGAACAAC
GTGCTGAGCA TAGGCTTGCC CGACGCATTC GTCACTCACG GCAGCATGAA CGATCTCTAC
AGGTTGCTGG AGCTGGATGC GGAAAACATC AGCAGGAAGA TCAGTGCGTT TCACCAGTGC
ATGGTAACAG AAAAAAACGA CAGCACCCAG AGCACGATGC GGACAGAAAG ATTGGCATAG
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| Protein sequence | MEQFHPVPPN GKYPFLSAIV SPEDLKKHTI HDLQKIADEC RSYLIDVVAE NGGHFGSSLG
VVEMSVAMHY VYNSPHDKII WDVGHQAYIH KILTGRKELM HTNRKFNGLA GFPKISESAH
DAFGTGHAST SISAAAGIAA AKKLSGSNDK VIAVIGDGSM TGGMAFEAMN HLGDIKSDVL
VVLNDNQMAI SPSTGGLKNY LVNITLNKTY NKARKFIWDS LSLLNNDLGE TAKNAVRKIE
DGIKAALTPG AFFEALGFRY FGPIDGHNTE QLVKAFREMQ ELPHPKLLHI ITTKGKGFKP
AEDDQSKWHA SSGGFDITTG KSLKKSGIAQ PPKYQDIFGA ALAELADSDH RITGITAAMS
SGTSLDIFQK AHPERFYDVG IAEQHAVTFA AGMAANGYKP FCAIYSTFLQ RAYDQLIHDV
ALQKLPVVFA IDRAGLVGED GPTHHGSFDL SFLRPIPGMV IMAPKDGQEL RDMLYTASKY
QNGPAAIRYP RGLSSEITLR PGFREIEIGK GKIVREGSSV AILAIGTMVE RALEASLLLE
ENGIDALVAN MRFLKPLDTA LLDDIAETHT DIVVLEENSI IGGLNSAVND YLRSKRRTNN
VLSIGLPDAF VTHGSMNDLY RLLELDAENI SRKISAFHQC MVTEKNDSTQ STMRTERLA
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