| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_1823 |
|---|
| Symbol | |
|---|
| ID | 6375514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | + |
|---|
| Start bp | 1977420 |
|---|
| End bp | 1978613 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642684320 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_001960222 |
|---|
| Protein GI | 189500752 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.536913 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACAGA ACAGAGAAGC TGTCATACGG ACCGTTGTTC CCGGCTCTTT AACCGCCTTT
TCAACGGTGA TAAGTGATAA CCAACAGGAT TGCATGTCAG GTAAGTCAGG CAGGAGTACC
GTGAAATTTG CAGAATCTGT CGCGCTTATC GCGATGATGA TGTCTCTCGC CGCGCTTTCT
ATCGATGCCA TGCTCCCTGC CCTTCCTGCG ATCGGCCGTG AACTTGGCGT CCTGCAGGAA
AACACCAACC AGCTTGTCAT CTCTCTCTTG TTTCTCGGCA TGTCGGCCGG ACAGATTCTT
TACGGTCCGA TGTCTGATTC AGCCGGCAGA AAGCCCGCGA TCTATACCGG TTTCGGCATT
TTCATCACAG GAACGCTCTT CTGCCTCTTC GCCACGAGCT TCACCATGAT GCTCTCCGGC
AGGATCCTTC AGGGGGTAGG AGCCGCAAGC ACCCGCATTG TTTCCATAGC AATCGTGCGT
GATCAATACG AGGGACCGAA AATGGCGCGC GTCATGTCTT TTGTCATGAC AATATTTATC
CTCATACCGA TTCTCGCACC TGCTCTCGGG CAAACCATGC TTAACGCATC TGGATGGAGA
GCCATCTTCG GTATCTTACT GTTTCTCTCC CTCTTCACGC TCGCCTGGTT CTCATTACGC
CAGCCAGAGA CCCTGAGCAG GGAAAAACGC ATCCCGTTTA CCATCAAAAG AATAGTGACA
GCCATCCGTG AAGTACTGGG TATTCGACAG TCATTAGCCT ATACCATCAT TTCAGGCCTC
GTCTTCGGTT CTTTTCTCGG ATACCTGAAC TCCTCTCAGC AGATCCTGCA GATACAGTAT
GGACTCGGAG AAGATTTCCC GCTCTACTTC GGCATACTTG CCACCGCTTT CGGTGCAGCG
ACCCTGCTGA ACTCAAAACT CGTCATGCTC TTCAGAATGC ACTCTCTCGT CCATCATGCG
ATGCACGCCC TTGCCGTGCT CTCCGGGTTG TTTCTCGTCG CTGCAATGAC GCAAAACGGG
CACCCTCCCC TCTGGGCTTT CCTCATCTAC CTTCTGCCTG TTTTTTTACC ATCGGCATCC
TGTTCGGAAA CCTCAACACT CTGGCAATGG AACCACTCGG GCACATTGCG GGTATCGGGG
CATCGACAAT CGGCTCCCTC TCGACCTTCC TCGCGTTGTC AGTCGGTACG GTGA
|
|---|
| Protein sequence | MPQNREAVIR TVVPGSLTAF STVISDNQQD CMSGKSGRST VKFAESVALI AMMMSLAALS
IDAMLPALPA IGRELGVLQE NTNQLVISLL FLGMSAGQIL YGPMSDSAGR KPAIYTGFGI
FITGTLFCLF ATSFTMMLSG RILQGVGAAS TRIVSIAIVR DQYEGPKMAR VMSFVMTIFI
LIPILAPALG QTMLNASGWR AIFGILLFLS LFTLAWFSLR QPETLSREKR IPFTIKRIVT
AIREVLGIRQ SLAYTIISGL VFGSFLGYLN SSQQILQIQY GLGEDFPLYF GILATAFGAA
TLLNSKLVML FRMHSLVHHA MHALAVLSGL FLVAAMTQNG HPPLWAFLIY LLPVFLPSAS
CSETSTLWQW NHSGTLRVSG HRQSAPSRPS SRCQSVR
|
|---|
| |