| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_1696 |
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| Symbol | |
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| ID | 6375383 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium phaeobacteroides BS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010831 |
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| Strand | + |
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| Start bp | 1836353 |
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| End bp | 1839676 |
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| Gene Length | 3324 bp |
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| Protein Length | 1107 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 642684190 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001960096 |
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| Protein GI | 189500626 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000188307 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCATAATT CACATGAAAC CCCTTCAAAC CGGGACGGAG AAAAACCGGA GCCGAACACA
GAAATAACCG AAAGGCAAGC CTCCTACCTT CTCAGCGCCC TCAGACAGCA TCCAGCCTAT
GCCGGCATTA AAACGCAAAT GTTCTCATCG TGCGAGCGCA ATACCAGCAA ACCATGCTCT
GAAATAACCG GAATTTCAGG CATTCAGGGC TCTCTGGCCA CGCTGCTTGC CGTGCAACTG
TTTACTGATC TCGGCATCCC GGTCCTGGTA CTGGCCTCGC AGAGCATATT CGACCTCTAT
GATAACGATC TTTCCGAACT GCTTCAACCG GAACAGGTGC ATACCGCCTC AGACGAACTC
TCTGCTGCGC TGGGCAAACT CTCCAGCGAT CAAAAAATCG TCCTTCTCGC TTCATTTGAT
GATCTGCTCA CTCCGCTGCA CTGCCCTGAA GAGCAGGATT CCATGCTCTT TACTCTACAG
ATTGATAAAG AGGCCGGATA CGGCAAACTG AAAAACTTTC TTCTGCAAAA CGACTATAGC
AAAAGCGAAT TCGTTGAAGA AGAGGGAGAG TATTCAACAC GTGGATCAAT TATCGATATC
TTCCCTTTCG GATCAAAAGC GCCCGTTCGA ATAGAATTCT TCGGAGATAC GGTTACCTCG
CTACGCTCCT TTGACACCGG CAGTCAGCTT TCAGGCGCCC GTCTTGACAG GGCGTTACTG
GGCGGCAACT TTGTTGCCGA CAAGAAAAGC GACTCTGAGA AATCATGGAA TCTGCTCGAC
CATCTTCCCG CCGAAACGTT ACTCATTATC GATGACATAA CCTCACTCAG CGCTCATGAA
AACAGAGCTG CTTTTGAGGA CAAACTGATG CGGTTCCGAT GCCTGGGCAT TAACCGGATT
GAAAAACAGT CCATTGATTT CCATGCGGAA GCCCAGACAA AATTGCATGC AAATTTCAAA
TTGTTCGCAA GGGAACTCAC CCGGATACAG TCCGGCAAAC AGCACACTGT TTTTGTAGGC
AACTCAAAAA AAGAGATCGA GGAACTTACA GAATTCATTG CTGAAGAAAT AGACACTACC
GGCCTGAAGA AACATATCGA AGTACACTGG GTCCCATTGA ACCTGCACTC CGGTTTTGTC
TTCAGCGGCT TTAACGTCTA CACTGAATCA GACATATTCG GCAAGCTGCA TACCCATAAG
TCTCATAAAA AAAGAGCCTT TAAAGGCATC TCTCTCAAAG ACCTCCAGAA GCTGAATATT
GGAGATTATA TCGTTCATGA AGATTACGGG ATCGGGATTT TCAAAGCACT TGAAACCATA
GAGGTCGGGG ATTCAGAGCA GGAAAGCGTC CTGGTCGAGT ATCAGGGGGG TGATCAGCTT
TACGTAAATG TCCAGAACAT CCGGCTCCTT TCAAAATACA CCGCATCTGA AGGCTCCCTG
CCGGCACTTT CAAAACTTGG AAGCTCAAAG TGGAAAGCAA AAAAAGAGAA AGTAAAAAAT
CGCCTGAAGG ATATCGCGTC GAAACTCATC AGACTCTACG CGAAAAGAAA AATGACCACA
GGCTTTGCCT TCAGGACGGA TTCCATATTC CAGAAAGAAT TCGAAGCATC GTTCATCTTC
GACGAAACCC CTGATCAGTT GAAAACGATT GAACAGGTTA AAAACGATAT GCAGTCAGGC
TCACCGATGG ACCGTCTGAT CTGTGGAGAT GCCGGTTTCG GTAAAACCGA AATCGCGATG
CGCGCTTCGT TCAAGGCTGT AGAATCAAAT AAACAGGTCG CGCTCCTTAC ACCGACAACC
ATACTTGCTC ACCAGCATGC AGAAACATTC AGACGCAGAT TTGAAAACGT TCCTCTGAAC
ATAGCCGTAC TCAGCCGTTT TGTTACAAAA AAAGAGCAGA AAAATCTTAT CGAAAAGATC
TCACGCGGCC TGATAGATAT AGTCATCGGC ACACACAGGC TTGTCTCAAA AGACGTCGTC
TTTCAGGATC TCGGGCTGCT CATTATTGAT GAAGAACAGC ATTTCGGTGT TTCCACAAAA
GAAAAGCTGC GTCAGAGCTT TCCAGGTGTA GATACGCTGA CCATGTCGGC AACTCCGATA
CCGAGAACAT TGCAGTTTTC AATGCTTGGC GCAAGAGATC TGTCCATTGT ATCAACTCCA
CCGAAAAACC GTCAGCCTGT TGAAACAGTC ATCACGCAGT TCAATCCGGA CACCATTCGT
TCCGCCATAC AGCATGAAAT AAGCCGTCGG GGCCAGGTTT TTTTTCTCCA TAACCGCATC
GCCGGTCTTG ACCAGATCCG GAACACCCTG CAGGAACTCG CGCCAGAAGC CAGAATCGGC
ATTGCTCACG GACAGATGCC GACATCCGAA CTCGAGAACG TGATGATGGA GTTCATCAGC
CATAAACTCG ATCTCCTCAT TTCAACATCG ATCATCGGAT CAGGTCTTGA TATATCCAAC
GCAAATACCA TTATCATCAA TCGTGCGGAT ATGTTCGGCC TTTCAGATCT CTATCAGCTC
AGGGGCCGTG TCGGCAGAAG CGAACGCAAA GCATACAGCT ATCTCATCAT CCCGCCGGTT
CACACGCTCA AAAGAGAAGC GATGGAAAGA CTGGCCGTCA TCGAAAGCTT TACCGAACTT
GGTTCCGGCT TCAATATCGC GCTACGTGAC CTCGATATCA GAGGAGCGGG AAACCTCCTG
GGAGCGGAAC AGTCTGGAGC CATTCATGAA CTGGGATTCG ACCTCTACCA GAAACTGCTT
GAAGAAGCTG TCACCGAACT CAAGACAGGA GTCTTCAGGT CACTCTTTAC CGACAAAGAG
CCCCAGACCA GCCAGACGGC AGGAATCACT GACATGATTT TTTATTTTGA CGCTCTGATT
CCTGATTATT ACGTCTCTGC AACCCAGGAA CGGTTTTCCT TCTATGAAAA AATATCAAAA
AGCACGACAG ACAGCCAGAT AGAAGCTATT GAAAAAGAAT TACGCGACCG GTTCGGCCCG
GTTCCCCGTG ATGTAGCAAA CCTGATAGGC CTTGCAAAGC TTAAAAACCT CTGTTCATCC
ATCGGTCTTG TCAAAGTCGA CATACAGCAA GACAAATTCA CACTGTACCT TCCCGATGAC
GAAAACACTG AATTCTACAC TCAGCCTTTC TTCCAGGAAC TGATCGCATG TGTACAGTCC
GAATGGATGC AGAAATATCG ACCTCGCTTT CAGGAAGGGA AAAAGATGAA GCTGATTATC
CATCTTCCCT CAAAGACATC TACTGAACCG TCGGTCATCA TGGAACTTTA CAGCTCCCTG
CTCAACAAAC TCAAAGGGGA GTAA
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| Protein sequence | MHNSHETPSN RDGEKPEPNT EITERQASYL LSALRQHPAY AGIKTQMFSS CERNTSKPCS
EITGISGIQG SLATLLAVQL FTDLGIPVLV LASQSIFDLY DNDLSELLQP EQVHTASDEL
SAALGKLSSD QKIVLLASFD DLLTPLHCPE EQDSMLFTLQ IDKEAGYGKL KNFLLQNDYS
KSEFVEEEGE YSTRGSIIDI FPFGSKAPVR IEFFGDTVTS LRSFDTGSQL SGARLDRALL
GGNFVADKKS DSEKSWNLLD HLPAETLLII DDITSLSAHE NRAAFEDKLM RFRCLGINRI
EKQSIDFHAE AQTKLHANFK LFARELTRIQ SGKQHTVFVG NSKKEIEELT EFIAEEIDTT
GLKKHIEVHW VPLNLHSGFV FSGFNVYTES DIFGKLHTHK SHKKRAFKGI SLKDLQKLNI
GDYIVHEDYG IGIFKALETI EVGDSEQESV LVEYQGGDQL YVNVQNIRLL SKYTASEGSL
PALSKLGSSK WKAKKEKVKN RLKDIASKLI RLYAKRKMTT GFAFRTDSIF QKEFEASFIF
DETPDQLKTI EQVKNDMQSG SPMDRLICGD AGFGKTEIAM RASFKAVESN KQVALLTPTT
ILAHQHAETF RRRFENVPLN IAVLSRFVTK KEQKNLIEKI SRGLIDIVIG THRLVSKDVV
FQDLGLLIID EEQHFGVSTK EKLRQSFPGV DTLTMSATPI PRTLQFSMLG ARDLSIVSTP
PKNRQPVETV ITQFNPDTIR SAIQHEISRR GQVFFLHNRI AGLDQIRNTL QELAPEARIG
IAHGQMPTSE LENVMMEFIS HKLDLLISTS IIGSGLDISN ANTIIINRAD MFGLSDLYQL
RGRVGRSERK AYSYLIIPPV HTLKREAMER LAVIESFTEL GSGFNIALRD LDIRGAGNLL
GAEQSGAIHE LGFDLYQKLL EEAVTELKTG VFRSLFTDKE PQTSQTAGIT DMIFYFDALI
PDYYVSATQE RFSFYEKISK STTDSQIEAI EKELRDRFGP VPRDVANLIG LAKLKNLCSS
IGLVKVDIQQ DKFTLYLPDD ENTEFYTQPF FQELIACVQS EWMQKYRPRF QEGKKMKLII
HLPSKTSTEP SVIMELYSSL LNKLKGE
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