| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_1373 |
|---|
| Symbol | |
|---|
| ID | 6375051 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | - |
|---|
| Start bp | 1487543 |
|---|
| End bp | 1488400 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642683869 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001959783 |
|---|
| Protein GI | 189500313 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00505195 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.27128 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAAGA ATCGTACATA CGGGCTGGGA GTAGTCATAA CGGGAGGTAC CGGAGGTCTG
GGTTATGCTC TTGCCAGAGA ATTCCTTCTG ATGGGTGATC GCGTCCTTAT CACCGGTCGT
GACCGGAAGC GCCTTGAGCA GGCAATTGAG ACCCTGAAAG TTGAAGCCAA GAGCTGTGAG
GTCTACGGAA TATGTCATGA TGTCTGCAAT GTAGATGATC TCGCTCTTTT TCGTTCGTTC
ATCGTGAGTC GTCTCGGACA GGTTGACCGC TGGATAAACA ACGCTGGAAC TGCAGGAATG
CGTAAAGCCC CCTTGTGGGA ACTCGATGCT CCGGATATTC TGGAAACCTG CAATACGAAT
CTTTTTGGCT CGTTACTGAT GGCAAGGACC GCTATAGAAA TCATGAGCGA TCAACCATCG
GAGGATGAAC CCGTCTATCA TCTGTTCAAC CTGGGTTTTT CTTCGACAGG AGCAAATTTT
TCACGATCAA ATATCCCGCA CAAAGCATCC AAGCTTGGCG TTGCTGCAGT GAGCCGTTTT
CTTGAAAAGG ATCTGCGCGA ACACGGAATC AAAAGCATAG GTGTCCATGA ATTGAGTCCG
GGCCTGGTAA AAACCGATCT GCTTTTCCGT GATACTTCAG CAGAAACAAA AGAATTTCTG
GACTGCATTG CAGAAACACC GGAAAAAGTC GCAGAAAAAC TCGTCGTCAA AATACGATCA
GTACAGAGCA GAAAATCACC TGTCCGCTAT CGATCAATAC CAGGCATGAC GGTCACGATG
CTTGGAAAAC TTGCGATACA AAAGATCAGG CCGTTGCTGG AAAAAACAAA TGCGGCTCTG
AGAGGGAAGA AGGGCTGA
|
|---|
| Protein sequence | MEKNRTYGLG VVITGGTGGL GYALAREFLL MGDRVLITGR DRKRLEQAIE TLKVEAKSCE
VYGICHDVCN VDDLALFRSF IVSRLGQVDR WINNAGTAGM RKAPLWELDA PDILETCNTN
LFGSLLMART AIEIMSDQPS EDEPVYHLFN LGFSSTGANF SRSNIPHKAS KLGVAAVSRF
LEKDLREHGI KSIGVHELSP GLVKTDLLFR DTSAETKEFL DCIAETPEKV AEKLVVKIRS
VQSRKSPVRY RSIPGMTVTM LGKLAIQKIR PLLEKTNAAL RGKKG
|
|---|
| |