Gene Cphamn1_1178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphamn1_1178 
Symbol 
ID6374853 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium phaeobacteroides BS1 
KingdomBacteria 
Replicon accessionNC_010831 
Strand
Start bp1269477 
End bp1270460 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content51% 
IMG OID642683676 
ProductTransketolase central region 
Protein accessionYP_001959593 
Protein GI189500123 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3958] Transketolase, C-terminal subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0058066 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0131189 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGAAC AAAACATCAT GGCTGAGGCC GTGAAATATG TTTCGCGCGG ATCAGTCGCT 
ACCCGCAAAG GATTTGGTGA CGCCCTTCTG GAGATCGGCA GGCAGGATCC TGATGTCGTG
GCCTTGTGCG CTGATCTGAC CGGATCACTC CAGATGCATC ATTTTCAGAA AGAGTTTCCC
TCCCGTTTTT TTCAGGTCGG AATTGCCGAG GCGAACATGA TATCCATTGC CGCCGGTCTG
GCAACTACAG GAAAAAAACC GTTTGCCGGG ACTTTTGCCG CTTTTGCCTC AGGGAGGGTA
TACGACCAGA TCCGTCAGTC GATCTGCTAT TCCCGTCTCA ATGTCAGGAT ATGCGCCTCA
CACGCAGGCC TTACTCTCGG AGAGGACGGC GCGACGCACC AGATGCTTGA AGATATTGGT
CTCATGCGCG GATTGCCAGG AATGACCGTT GTCGTTCCTG CTGATTACAG CGAAACAAAA
CGGGCCGTGA AAGCGCTGCA CAAACATGAA GGTCCTGCCT ATCTGCGATT CGGAAGGCCT
TCTGTTCCGG ATTTCACCCT TGATGATGAT GGTTTCGAGA TAGGAAAATC AATCGAACTG
AACTCTGGAA AAGATGTAAC GGTTATTGCT TGTGGCATCA TGGTATGGCA AGCGCTCGAG
GCGGCCCGTA TACTTGAAAA AGAAGGGGTT ACTGTACGAG TGATCAATAT GCATACGATC
AAGCCTGTCG ATAAGCTGGC TATTGTCCGT GCGGCAAACG ATACCGGTGC AATTGTTACC
GCCGAGGAGC ATCAGGTTCA TAATGGTCTC GGTGACGCGG TGGCTCATGT GTGCGCGGAA
ACGATTCCGG TGCCTATTGA GATGGTTGGA GTCGAAGATG TGTTCGGTGA GTCAGGGAAG
CCGGATGAGC TGATGAGTAA GTATAATCTG GCAATTGAAG ATATTCTTGA AAAGATATAC
CTGGCACTGC GCAGGAAAGA GTAA
 
Protein sequence
MAEQNIMAEA VKYVSRGSVA TRKGFGDALL EIGRQDPDVV ALCADLTGSL QMHHFQKEFP 
SRFFQVGIAE ANMISIAAGL ATTGKKPFAG TFAAFASGRV YDQIRQSICY SRLNVRICAS
HAGLTLGEDG ATHQMLEDIG LMRGLPGMTV VVPADYSETK RAVKALHKHE GPAYLRFGRP
SVPDFTLDDD GFEIGKSIEL NSGKDVTVIA CGIMVWQALE AARILEKEGV TVRVINMHTI
KPVDKLAIVR AANDTGAIVT AEEHQVHNGL GDAVAHVCAE TIPVPIEMVG VEDVFGESGK
PDELMSKYNL AIEDILEKIY LALRRKE