Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphamn1_1000 |
Symbol | |
ID | 6374669 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium phaeobacteroides BS1 |
Kingdom | Bacteria |
Replicon accession | NC_010831 |
Strand | - |
Start bp | 1074070 |
End bp | 1074753 |
Gene Length | 684 bp |
Protein Length | 227 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 642683501 |
Product | ABC transporter-related protein |
Protein accession | YP_001959424 |
Protein GI | 189499954 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00286652 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCGAAA CACTTATCAA AATGCGCTCG CTCTGCAGGT TCTATGAAAT GGGTGACCAG ATTGTCAAGG CGCTTGACAG CGTTGACCTC AACTTCAACC GTAACGAGTA TGTTTCGATC ATGGGGCCGT CAGGAAGCGG GAAATCGACG CTGATGAATA TTATCGGGTG TCTCGATACT CCCTCGTCGG GCTCTTATGA ACTCAATGGA CAACGTGTCT CGGAAATGGA TGATGACGAG CTTGCCAGAA TACGGAACAG CGAGATCGGC TTTGTTTTTC AGACATTCAA CCTGCTGCCC CGGCTCAACT GTCTGAGAAA TGTAGAGCTT CCTCTCATTT ATGCGGGAGT CAACGCCGAA GAACGCTACG ACCGGGCGCT CGCCGCTCTG GACAGGGTCG GACTCGGCGA CCGGGTCAAC CATAAACCTT CTGAACTTTC CGGCGGCCAG ATCCAGAGAG TAGCCATTGC ACGGGCTCTC ATCAACAACC CCTCCCTTAT TCTTGCAGAC GAACCGACAG GGAATCTCGA TACGTCCACC AGCAAAGATA TCATGTCCAT TTTCAGTGAG TTGTCCGATG CGGGAAATAC CATCATACTT ATCACCCATG AAGAGGAAAT CGCGAAGTAT ACCCGCCGTT CCATCAGTTT ACGTGACGGC ACAATAGAAC GTGACACGCA GTGA
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Protein sequence | MTETLIKMRS LCRFYEMGDQ IVKALDSVDL NFNRNEYVSI MGPSGSGKST LMNIIGCLDT PSSGSYELNG QRVSEMDDDE LARIRNSEIG FVFQTFNLLP RLNCLRNVEL PLIYAGVNAE ERYDRALAAL DRVGLGDRVN HKPSELSGGQ IQRVAIARAL INNPSLILAD EPTGNLDTST SKDIMSIFSE LSDAGNTIIL ITHEEEIAKY TRRSISLRDG TIERDTQ
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