| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_0987 |
|---|
| Symbol | |
|---|
| ID | 6374656 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | - |
|---|
| Start bp | 1060730 |
|---|
| End bp | 1063390 |
|---|
| Gene Length | 2661 bp |
|---|
| Protein Length | 886 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642683488 |
|---|
| Product | glycoside hydrolase 15-related |
|---|
| Protein accession | YP_001959411 |
|---|
| Protein GI | 189499941 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00067238 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTACAGAG AGATTGCCGA CTATGGGCTC ATAGGGGATA TGCATTCCGT GGCGCTGGTT
TCGGGAGACG GTTCTATTGA TTACTGCTCT CTGCCGTTCC TCGACTCTCC TACAGTTTTC
GCTTCGCTGC TGGACGATGA AAAAGGAGGC TTTTTCAGTA TCAGGCCAAA AGAAAGTTTC
ACCTCCTCAC AGCAGTATGT TCAGGATACC AATGTGCTGG TATCTACGTT CAAAAACGAT
GATGGCCAAG CCGATCTCTA TGACTTCATG CCTGTGGCGA CCCGCCACCT GGTTACCTCA
AAGGAACACA GGATAGACCG CTGCCTGGAA ATGAAATCCG GCATTCTCGA ATTTGAGCTT
GCGTTCATGC CGAGACCCAA CTATGCAAAA ACCGTACCTG TTGTCACCTG CCGGGGAAAC
AGGATATCCG CATTCAGCCA TGAACAGCCC CTCACACTCA TTCACTCTCT TCAGGAATAC
CGTGTCCGGC AATGTAATAA CGGGATTGTC GTTATCGATT TTTCACTTTC AGCTGAACAG
AGCGCCCGGT TCAGCCTGAT CTACGGCGAT GTCACCGAAA GCGTAAGCGA CTCGTGCAGC
CTTGAAAAAA ATATTGAATT CTGGAAAAAC TGGCTCCACA ACTGCATGGG AGAACATTGC
GCGTTTCTCG GAGAGTATAC GCAAATGGTC AACCGCTCAC TGCTCGCCCT CAAACTCCTC
ACCTTTCATC CGACAGGAGC GATAGCCGCG GCGGCGACAA CTTCCCTTCC CGAAGCAATC
GGCGGAGAAC GCAACTGGGA TTACCGGTTC ACCTGGCTGC GTGACGCTTC GTTCACCCTC
AAGGCTTTTT TCTCACTTGG CCATATAACC GAAGCCGACG GGTTCATTCG CTGGCTGCAC
GCCACCTATC GAAAACATGA AAAAGAAACT ATCCGGATCA TGTATTCTAT CCGTGGAGAA
GAGATGCTCC ACGAAAAAGA GCTCAGCCAT CTGAAAGGCT ATAAAAACTC CACACCCGTC
CGTATCGGAA ACCTTGCTCA CAAGCAAAAC CAGTGGGACA TCTACGGGGA AGTCATGGAC
GCGGCACTCA GACTCTCCGA TTACGCGGGA AAGATCGACG AAGAACTTTG GCCCTTTTTC
CGTGACATCT GCACCATGGC CATGAAGAAC TGGCAAAAAC CTGACGACGG AATCTGGGAA
GTCAGAAACG GCCCCTGCCA TTTTGTTTAT TCCAAGGTCA TGTGCTGGGT CGCTCTCGAC
AGGGGAATTA TCATCGCGAA CCGATACGGC TTCGACGCAC CGGTAGCAGA GTGGATTGAA
GAACGGGAAA CCATTAAAAC CGATATCCTC GAGAAGGGCT TCAACCGGGA CTTGAAGAGT
TTTGTTCAAC GTTACGGCTC CCTGGAACTC GATGCAAGCC TGCTCCTGCT CCCTCTGGCC
AATTTTCTTC CGATAAACGA TGAACGGATA CAGGGCACCA TCAACGCCTG CAAAAAAGAG
TTGCTGCACG ATGGTTTTCT CTCCAGATAT ATTGCTGATG ACGGACTCGA TGGAGAAGAA
GGAGCGTTCG TTCTCTGCAA TTTCTGGCTG ATCGAGTGCC TTGCACGTTC AGACAGAATT
GAGGAAGCCG AAAAGCTGAT GAAGGAAACC CTGCGTTCAG CAAACAGACT CGGCCTTTTC
TCCGAAGAGT TCAACAGCAG CACCGGTGAA CTGCTCGGAA ACTTCCCCCA GGCATTCAGC
CACATCGGGT ATATCAATGC CGTATCCGCT ATTCTGAATG CACGGGGACG CTCTTTCGAG
GAAGAGGCAA AAACGACGCT CGCCGACAAG CTGAGCAAAA TCCTCCCCTT TCAGGCCAAT
CTCAATGACG GCCCTGAAAC AGCTGACGCC ACGGATACTG AAATCGCGGT CCGTCTCAAA
AAACTTCTCG GAAAATTGCA GGGCGCATTC TTCAATGTCA GCATGGGAAG GGTAAACTAT
CAAGCGATGA AGCAATCGGA ACGATTTCGT GAATACCAGC AACTTGCTGT GAGCCTCAGA
TCGTTCAGTC CCGAATCACT CGGCAACGAT AACGAAAAAA AAGCCTTCTG GATAAACATC
TACAACATCC TCATTATCCA CGGCGTCATA GAATTCGATA TCCGGAACTC AGTCCTTGAA
ATCATCAACT TTTTCGGAAG AATAGGCTAC ACTATCGGCA ACACGTTTTT TAGTCCGGAT
GACATTGAAC ACGGAATTCT CAGAAAAAAC CGTCATCACC CCGCATTCAT GCTCCGGCCT
TTCTCTCCAT TCGATTCACG GCTGCCGCTC ATGGTCGAAA CATTTGACCC GAGAATCCAT
TTCGCGCTGG TCTGCGCATC GAGCTCGTGC CCTCCGATCG AGTTCTACGA TCCGGAACAT
ATCGACGATC AGCTCGATAT CGCAACGAGA AGCTTCATCA TCCGGAGAGG CATTGAAACA
GACAGTGAGA ACAACACCGT CCGTCTATCG GAGATATTCA AATGGTATCA ACATGATTTC
GGGAAAGACA AAACCGAAGC ACTCTCCTAT ATCGCGGAAT TCGCCAATGA AAAAACCAGG
CAGTTCATAC TGAAGAACCC AGGAAAACTG AAGGTCGAAT ATCTGCCCTA TAACTGGAAC
CTCAACAGCA CGCTCGGATG A
|
|---|
| Protein sequence | MYREIADYGL IGDMHSVALV SGDGSIDYCS LPFLDSPTVF ASLLDDEKGG FFSIRPKESF
TSSQQYVQDT NVLVSTFKND DGQADLYDFM PVATRHLVTS KEHRIDRCLE MKSGILEFEL
AFMPRPNYAK TVPVVTCRGN RISAFSHEQP LTLIHSLQEY RVRQCNNGIV VIDFSLSAEQ
SARFSLIYGD VTESVSDSCS LEKNIEFWKN WLHNCMGEHC AFLGEYTQMV NRSLLALKLL
TFHPTGAIAA AATTSLPEAI GGERNWDYRF TWLRDASFTL KAFFSLGHIT EADGFIRWLH
ATYRKHEKET IRIMYSIRGE EMLHEKELSH LKGYKNSTPV RIGNLAHKQN QWDIYGEVMD
AALRLSDYAG KIDEELWPFF RDICTMAMKN WQKPDDGIWE VRNGPCHFVY SKVMCWVALD
RGIIIANRYG FDAPVAEWIE ERETIKTDIL EKGFNRDLKS FVQRYGSLEL DASLLLLPLA
NFLPINDERI QGTINACKKE LLHDGFLSRY IADDGLDGEE GAFVLCNFWL IECLARSDRI
EEAEKLMKET LRSANRLGLF SEEFNSSTGE LLGNFPQAFS HIGYINAVSA ILNARGRSFE
EEAKTTLADK LSKILPFQAN LNDGPETADA TDTEIAVRLK KLLGKLQGAF FNVSMGRVNY
QAMKQSERFR EYQQLAVSLR SFSPESLGND NEKKAFWINI YNILIIHGVI EFDIRNSVLE
IINFFGRIGY TIGNTFFSPD DIEHGILRKN RHHPAFMLRP FSPFDSRLPL MVETFDPRIH
FALVCASSSC PPIEFYDPEH IDDQLDIATR SFIIRRGIET DSENNTVRLS EIFKWYQHDF
GKDKTEALSY IAEFANEKTR QFILKNPGKL KVEYLPYNWN LNSTLG
|
|---|
| |