| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_0976 |
|---|
| Symbol | |
|---|
| ID | 6374645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | + |
|---|
| Start bp | 1050144 |
|---|
| End bp | 1051394 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642683477 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_001959400 |
|---|
| Protein GI | 189499930 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.351187 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.117285 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTTGACA GTAATTTATT TCCGTTTTCC AACGGGGTTC TGTGTTGTGA AGGGGTTTCG
CTTGAAAGAC TTGCGGAAAA GTACGGGACC CCTCTTTTCG TGACCAGTCG AAACAGCCTT
GTCAATCAGT ACAGGTCATT TGAAAAGGCG TTTGCCTTGC TGGATCACCT GACCTGTTAC
TCTGTGAAGG CTAATTTCAA CCTTCATATC ATTCGTACGC TTGCCGCCGA GGGTTGCGGT
TTCGATGTCA ATTCAGGCGG AGAGCTTTAC CGTGCGCTTC AGGCAGGGGC TGATCCGGCA
AAGATCATCA TGGCAGGCGT CGGCAAGAGC GCTGCTGAAA TTGAATACGC CATCAGTTCC
GGTATCCTGA TGCTCAAGAC AGAGTCTCTC TCTGAGCTTC GCCTGATTGA TGAAATCGCA
GGTCGTCTGG GTGTGCAGGC ATCTGTGGGA ATCAGGGTCA ATCCGAACGT GACCGCTGAA
ACGCATCCCT ACATTACCAC CGGTGACAGT AAAGAGAAGT TTGGTATTGA CGAGACGGAT
CTTGCCCAGG TGTTTTCCCT GATCGGAGCT ATGGATCATG TCAATCTGAC GGCTCTCGAC
ATGCATATCG GATCACAGAT TTTCGATACG GAATTCTATC ACGCTGCTTC GGAAAAACTG
CTTGACGTGC TTGCCGTTGC GCGTTCTGCC GGGTTTGCTA TTCGTTACTT CGACATAGGC
GGCGGGTTTC CGGTTACCTA TGACCCGCAA AAACCTGCGA CGCCGATAGG ACATTTTGCT
GAAAAGCTTA TTCCTTTGCT TGAAAAGGCA GGGACAACGA TACTTTTCGA GCCCGGCAGG
TTTATCGCGG CCAATTCGAC CGTACTCGTT ACCCGGGTAC TCTACAGGAA ACGCAATCAC
GCAGGAAAGG AGTTTGTGAT TGTCGATGCA GGAATGACCG AGCTTATCCG TCCTGCACTG
TACCAGTCCC ACCATGAAAT TGTCGCGGTC AAACCGCATG ACTCCATGAT GGTGGCTGAT
GTCGTGGGCC CGGTGTGTGA GTCTGGTGAC TTTTTTGCAA GGGCGAGAAC CATAGACGCC
GTCGGAGAGG GAGAGCTTCT TGCCGTTCTT TCAAGCGGAG CATACGGTTC AGTCATGGGG
AACAATTACA ACGGCCGTCT TCGCCCGGCT GAGGTCATGG TTGACGGCGA CGATGCAACG
CTTATCCGCA AAAGGGATAC GTTCGAGCAA CTCATCCAGA ATGAAGTATA G
|
|---|
| Protein sequence | MLDSNLFPFS NGVLCCEGVS LERLAEKYGT PLFVTSRNSL VNQYRSFEKA FALLDHLTCY
SVKANFNLHI IRTLAAEGCG FDVNSGGELY RALQAGADPA KIIMAGVGKS AAEIEYAISS
GILMLKTESL SELRLIDEIA GRLGVQASVG IRVNPNVTAE THPYITTGDS KEKFGIDETD
LAQVFSLIGA MDHVNLTALD MHIGSQIFDT EFYHAASEKL LDVLAVARSA GFAIRYFDIG
GGFPVTYDPQ KPATPIGHFA EKLIPLLEKA GTTILFEPGR FIAANSTVLV TRVLYRKRNH
AGKEFVIVDA GMTELIRPAL YQSHHEIVAV KPHDSMMVAD VVGPVCESGD FFARARTIDA
VGEGELLAVL SSGAYGSVMG NNYNGRLRPA EVMVDGDDAT LIRKRDTFEQ LIQNEV
|
|---|
| |