| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_0588 |
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| Symbol | |
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| ID | 6374252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium phaeobacteroides BS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010831 |
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| Strand | + |
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| Start bp | 617790 |
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| End bp | 619505 |
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| Gene Length | 1716 bp |
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| Protein Length | 571 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 642683101 |
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| Product | Tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_001959028 |
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| Protein GI | 189499558 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.795395 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0835537 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGTGTAC TCCAGCGCTT TTGTATACTT TTGGTGTTTC TGTCAGGCTT GATCCACAGC
GGTTGTACAG GAAGCTCGAC GGCGGGAAAT CCTGACCGGG TGGTAGCCGA CTCTCTTAAG
GAGGTATCAA GAGATCTCCT GGTGCAAGGC GCTTTGTCAG CGGTCAAGGG AGACTATCAG
GATGCTATAG GGCAATACAG GAAGGCCCTT GTTGCAGAAC CAAAAAACGC AGCTGTAAAT
TTTTCTCTTG CAAAAGCTTT TGTTGCGTTG ACTAAGCCGG ATTCCGCTCA ATATCACGCG
GAAAAGGCGG TGACTCTTCA GCCGGAAAAC AGGTTCTACC GTCAGCTGCT GGCAGGTATC
TATTTCGATA TGAAATATTA TGATAGGGCA GCAGTTCAGT TTGAACAGCT TGCTGAACGT
TTTCCTTCAA AGACCAAAAC CCTCTTTTTT CTTGCTCATG CCTATCTTGC CGATGAAAAG
TATGCAGACG CCCTGAATAC TTTTTTACGC ATCCTGCAGC ACGATCCTTC AAATGAAAAC
GCCCGCATAC AATCGCTATG GCTTGAACTG AAGTTGGAAC GATATGATGC TGCGATAAAG
AATGTGGAAT ACATGATCCG TGAGAAAGGA GATAATGACA AATTGCAGCT TACGCGGGGA
GAACTCTATT ATCAGTCGGG TAAGGTCATG AAAGCAAAGG AGATATTCAG GTCGATACTC
GGCGGTAACC CTGCGTTCAT ACCGGCCTGG ATCGCGCTTA TTGAAGCGCA TATCGAACAG
GATGAAGAGG AGCTCTATGT GAAAGAGCTG AGGAGATTTT ATGGCATTGA CTCGATCGGA
TTTTTCCCTA AAGCAGAGTT TGTCAAGGCA TTCATGGTCA GGAGTGAAAA GGATCTCTCC
TACAGTGAGG CGGTTGGCAC CATGGTAGAA GAGCTGGTGT CATTCTATCC GTCTGAGTCA
ACCGTTTATG TACTCAGGGG GATGTTTCTT CGCGTACAGA AACGGTACAG GGACGCAGGA
GCGGATTTTC TCAGGGCTCT TGAGATTGAT TCTCATAATA TTTTTGCCTG GGAGGAGTAT
GCGTCGGCCT ATATGTCGCA GGAGGACTAT GAACAGGTTG TCTCTACGGT TTCTCAAGCC
AGAAAACGAA CCGGACGCTC ATCACTGCGC CTCGATGTAT TTGAAGGATA CGCCCTGTTC
CGTTCAGAGA ATTTGAGGAA ATCTGTCGAT GTGCTTGAGA AGGCGCTCAG CTCAGAAATA
GAAGACAAGC CTTCGTGGTT GCTTGTTCAA GCCCACATTA CGCTTGCTAT GGCCTATGAC
AGGTTGCAGG ATCAGCTGAA AAGCATAAGC GCCTACAAAG ATGTGCTCAG TCTTGATCCG
GAGAATGCCC TGGCTCTGAA TAATCTGGCA TATCTTTATG CCGAGAGAGG GGAAAATCTG
AATGAGGCGA TAGAGTATGC GAAAACAGCT GTTGAGTCAG ATCCTGATAA TCCGGTTTAT
CTCGATACGC TCGGCTGGCT CTATTATAAA ACCGGTGAGT ACGGAAAAGC ACGGGAGTAT
TTAGAAAAAG CGCTGGCAAA AGACCCTGAT GAACCTGAGA TTTATGATCA TCTTGCAGAG
ATATACCGTG CACTCGGAAA AGAAACAAGA GCGAAGGAGT TTCGGGAAAA GGCTGATGAG
TTGAGAGGGG GGGAGGCAGA GGAAAGGCAA AAATAA
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| Protein sequence | MCVLQRFCIL LVFLSGLIHS GCTGSSTAGN PDRVVADSLK EVSRDLLVQG ALSAVKGDYQ
DAIGQYRKAL VAEPKNAAVN FSLAKAFVAL TKPDSAQYHA EKAVTLQPEN RFYRQLLAGI
YFDMKYYDRA AVQFEQLAER FPSKTKTLFF LAHAYLADEK YADALNTFLR ILQHDPSNEN
ARIQSLWLEL KLERYDAAIK NVEYMIREKG DNDKLQLTRG ELYYQSGKVM KAKEIFRSIL
GGNPAFIPAW IALIEAHIEQ DEEELYVKEL RRFYGIDSIG FFPKAEFVKA FMVRSEKDLS
YSEAVGTMVE ELVSFYPSES TVYVLRGMFL RVQKRYRDAG ADFLRALEID SHNIFAWEEY
ASAYMSQEDY EQVVSTVSQA RKRTGRSSLR LDVFEGYALF RSENLRKSVD VLEKALSSEI
EDKPSWLLVQ AHITLAMAYD RLQDQLKSIS AYKDVLSLDP ENALALNNLA YLYAERGENL
NEAIEYAKTA VESDPDNPVY LDTLGWLYYK TGEYGKAREY LEKALAKDPD EPEIYDHLAE
IYRALGKETR AKEFREKADE LRGGEAEERQ K
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