| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_0514 |
|---|
| Symbol | |
|---|
| ID | 6374178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | - |
|---|
| Start bp | 536425 |
|---|
| End bp | 540264 |
|---|
| Gene Length | 3840 bp |
|---|
| Protein Length | 1279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642683031 |
|---|
| Product | RTX toxins and related Ca2+-binding protein |
|---|
| Protein accession | YP_001958958 |
|---|
| Protein GI | 189499488 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAAC AAAAATCTGC CGATTTGGCA ATCGCACCGG TACAGCCTGC CGACAACGGG
CTTGATCAGC TTGTAGAGGC CATTGAAAAC GATCCGGGAC TTGAAGGAAG AATTTCAGAA
CAGGACATCG AGGGAGGAGC AAAAGCAGCC GCGGCCATGA ATGCCATTAT CACCGAGGCT
GTTGAAGCTA CCGGATCAAT GAAAGACGGA GTTGTTACCG CTGATGAAGT TCGGAGTATA
AACACGTACA TCAGAACACA CTATCAGCAG GAATGGATAG ACCTGCATGG TGACGATGAA
AACGGCGAGG AAACGGGATT CCATCTTGTA CAGAATGACG GGGCGACCCT CAGGTACCGG
GGCGATAACC TTATCAATAC TGTGGCCGAC GGCATCTACC ATCTGGGGTT CGAAATCGAG
GGCGACAACT TCCTGAATGA AGACGGCGAC CCGAATGCCT CCGTCGAGCA GGTCGCCGAA
TGGCTGACAC AGTTCTACAC GGATCACTCA ACAACCGGTA CCGGCCTTGA CAGAATCACC
GATACGATCA TGGCCGATAA GGGACTTGAC AGGAACATCA CCGACGCAGA GATAGCTGAA
GCCGCCGACA ATGCCGACAG GATGAATGAA ATAATCGATG AAGCCATCAG GGAAACCGGG
GTTGCGGCGG ATAATCACAT TTCGACGGAT GACATCATCC TTATCAATGA ATACATTCAG
GATAACCATT ACGATGAATG GGTGGAACTG CACGGAGACG ATGAAAACGG GGAAGAAACC
GGATTTCACC TTGTCCAGAA TGATGGTGCA TCCACCCGCA TGTTCGGAAA AAATTTCGTC
AACACGGTTG CTGACGGCGT ATATCACCTG GGATTCGATA TCGAAGGGGA CTACATCCTG
AACGAAGACG GTAACCGCAA CGCAAGTCTC GAAGATCTCG CCGGCTGGGT ACAGTATTAC
TATGTCGACC AGTCAGACAC CGGCACCGGT CTTGACCGGC TCACCGATGC GGTAAAAAGC
GATCCGGGCC TGGCGAGAAA CACCGATGCG GATGATATCA ATGCCGGAGC AGATGCCGCA
AACAGATTGA ACGAGATCAT CGATGAAGCA ATCAGGGAAA CCGAGGTTGC CGGTGACGGA
AGAATATCGG TGGAAGATGT ACGAACCATC AATGCGTATA TCCGGGAACA TCATCTCGAG
GAATGGACGG AACTCCACGG AGATGACTAT GACAACGGCG ACGAAACAGG ATTCCATCTC
GTACAGAACG ACGGCAGCAA CATACAGTTC CGTGGTGACA ACCTCATCAA CACGGTTGCC
GACGGCGTCT ATCATCTCGG GTTTGAGATC GAAGGAGACT ATATTCTCAA CGAAGACGGG
GACCAGAACG CCAACCTCGG CGACCTGGCC ACATGGCTGA ACTACTATTA CCTGGATAAA
GAGATCATCT ACGGTTCCGA GGAAGCTGAC ACCATCAGAG GACTGAACCA TGCCGAAGAA
GTGCATGCAA GAGGAGGGAA CGACAAAGTT TACCTTGATG CGGGAGATGA TTTTGCCGAT
GGTGGAGATG GCAATGATAT CATCCTTGGA GGAGAGGGTA ATGACATCCT TTCAGGCGGG
GCCGGCGACG ATAAACTCTA CGGTCAGGAA GGCAGTGATA TCATCGCTGG ACAGGAAGGG
AATGATTATA TACACGGCGG AGATGACAAT GATTATCTGC ATGCCGGCAG CGGTAACAAC
CGGGTCTACG GCGGCAGTGG GGATGACATG CTTATTGCTG AAGATGGTGA CGACTCGATG
AGCGGTGACG ACGGCAACGA CACCCTCACA GGAGGAGGCG GCGATGACAG GCTCTATGGA
GGAACTGGAG CCGATACCCT CTACGGAGGC GCAGGCAATG ACTACCTCTA TGGACAGGAT
GACAATGATA CGCTGCTCGG CGAAGAGGGC AACGACTATC TTAACGGCGG TAACGGTGAT
GACGCGCTCG ACGCGGGAAG CGGCGACAAC AAGGTGTACG GCGGGGCCGG TAACGACAAA
ATAACTGCCG GGGACGGCGA CGATATCATG AGCGGTGATG ACGGGAACGA TACCATTACC
GGAAACGGAG GCAATGACAG AATCAGTGGT GGCAAGGGAA CGGATATGCT GTATGGCGGC
ACAGGGGACG ATTACCTCTA TGGACACGAC GGCAACGATA CGCTCTTCGG CGAAGAGGGC
AACGACTACC TTCACGGCGG TAACGGTGAT GACGCGCTCG ACGCGGGAAA CGGCAACAAC
AAGGTGTACG GCGGGACCGG TAACGACAAA ATGACTGCCG GGGACGGCGA CGATATCATG
AGCGGCGAAG ACGGGAACGA TACCATCATC GGAAACGGCG GCGATGACAG GCTGTATGGC
GGGGCCGGTA CCGATCGTTT ATCGGGAGGA AACGGCAATG ATTATCTCTA CGGCAACGAT
GATAACGACG CTCTCTCCGG GGGCGGGGGT GATGACTATC TCCATGGCGG TAGCGGAGAT
GACAAACTTG ATGCAGGTGA AGGAAACAAT CGGGTATACG GTGGCGACGG AAACGACGAA
ATGACCGCAG GAGAAGGAAA CGATATCATA AGCGGCGAGG GCGGCATTGA TATCATCACC
GGAAACGGCG GCAACGACAA GCTCTACGGC GGGGCCGGCG AGGATTTTGT GAAAGGGGGA
ACCGGCGATG ACTACCTCTA TGGTCAGGAC GACAACGACA CACTCCTGGG CGAAGAAGGA
GACGATTACC TCCATGGCGG TAACGGAGAC GACAAACTCG ACGCAGGCGA AGGTAACAAT
CGGGTATACG GCGGAGCCGG AAATGACCTG ATTGTCGCTA TTGGCGGCGA TGACAGGCTG
AGCGGTGACG ATGGTGATGA TATCATCATA GCCAATGGAG GAAACGACCG GCTGTACGGC
GGTAACGGCA GCGATACGCT GGGGGCTGGC GAAGGCGATG ACTATCTCTA TGGAAACGAT
GGGAATGACC TGCTTTATGG TGAAGCCGGC AACGATTATC TCAATGCAGG AAACGGTGAC
GACACTGCAA TCGGAGGAAG CGGCGATGAC CTGATCTACG GACAGAACGG AAATGATGTG
CTGTCCGGCG AAGAAGGCAA TGACCGCATC TACGGAGGGA ATGACAATGA TACCCTTTCG
GGTGGAGAAG GAAGTGACCG GCTGTACGGA CAGGATGGGA CCGACCAGTT GTACGGAGAA
GACGGGAACG ACTATCTCAA CGGCGGCAAC GGCAATGACA CCCTCCTCGG CGGAGAAGGT
GACGATCGGC TCTACGGCAA TGAAGGCGAT GATATACTCT ATGGAGAAAA CGGTAATGAC
CTTCTTTACG GAGAAAACGG TAACGATATC CTCATCGGTG GTGACGGCAG CGATATTCTT
CGTGGAGGTA ACGGGGACGA CATACTGCTT GGCGGAGAAG GCAGCGACCT TCTCTACGGA
CAGGACGGCA ATGATCACCT TATCTCACTC GATGACAGCG ACAACGATAT CATGAAAGGA
GGAAACGGTT CGGACAGATT TTATTTCACG GCACTCAACG GCAATGACCT CATTTCCGAT
TTCTCTCAGT CGGAACAGGA TTCCATCATG CTTCTTGACA CGGACAACGA CTCTAACTCG
TTCTCTATGG ATCTGACGTT TGAACATGCT GATTTGAATA ACAACGGCAC AGCTGAGTCG
ACGATCATTT CCATGCATGC TGCTGACGGT TCCGACCTTG GCTCTGTCAC CGTTTACGGC
AGCCTGATGA CTGAAGCAAA TATCGTTGAA GAAAACGGTA ACTACGCGCT GATCATGTAA
|
|---|
| Protein sequence | MIEQKSADLA IAPVQPADNG LDQLVEAIEN DPGLEGRISE QDIEGGAKAA AAMNAIITEA
VEATGSMKDG VVTADEVRSI NTYIRTHYQQ EWIDLHGDDE NGEETGFHLV QNDGATLRYR
GDNLINTVAD GIYHLGFEIE GDNFLNEDGD PNASVEQVAE WLTQFYTDHS TTGTGLDRIT
DTIMADKGLD RNITDAEIAE AADNADRMNE IIDEAIRETG VAADNHISTD DIILINEYIQ
DNHYDEWVEL HGDDENGEET GFHLVQNDGA STRMFGKNFV NTVADGVYHL GFDIEGDYIL
NEDGNRNASL EDLAGWVQYY YVDQSDTGTG LDRLTDAVKS DPGLARNTDA DDINAGADAA
NRLNEIIDEA IRETEVAGDG RISVEDVRTI NAYIREHHLE EWTELHGDDY DNGDETGFHL
VQNDGSNIQF RGDNLINTVA DGVYHLGFEI EGDYILNEDG DQNANLGDLA TWLNYYYLDK
EIIYGSEEAD TIRGLNHAEE VHARGGNDKV YLDAGDDFAD GGDGNDIILG GEGNDILSGG
AGDDKLYGQE GSDIIAGQEG NDYIHGGDDN DYLHAGSGNN RVYGGSGDDM LIAEDGDDSM
SGDDGNDTLT GGGGDDRLYG GTGADTLYGG AGNDYLYGQD DNDTLLGEEG NDYLNGGNGD
DALDAGSGDN KVYGGAGNDK ITAGDGDDIM SGDDGNDTIT GNGGNDRISG GKGTDMLYGG
TGDDYLYGHD GNDTLFGEEG NDYLHGGNGD DALDAGNGNN KVYGGTGNDK MTAGDGDDIM
SGEDGNDTII GNGGDDRLYG GAGTDRLSGG NGNDYLYGND DNDALSGGGG DDYLHGGSGD
DKLDAGEGNN RVYGGDGNDE MTAGEGNDII SGEGGIDIIT GNGGNDKLYG GAGEDFVKGG
TGDDYLYGQD DNDTLLGEEG DDYLHGGNGD DKLDAGEGNN RVYGGAGNDL IVAIGGDDRL
SGDDGDDIII ANGGNDRLYG GNGSDTLGAG EGDDYLYGND GNDLLYGEAG NDYLNAGNGD
DTAIGGSGDD LIYGQNGNDV LSGEEGNDRI YGGNDNDTLS GGEGSDRLYG QDGTDQLYGE
DGNDYLNGGN GNDTLLGGEG DDRLYGNEGD DILYGENGND LLYGENGNDI LIGGDGSDIL
RGGNGDDILL GGEGSDLLYG QDGNDHLISL DDSDNDIMKG GNGSDRFYFT ALNGNDLISD
FSQSEQDSIM LLDTDNDSNS FSMDLTFEHA DLNNNGTAES TIISMHAADG SDLGSVTVYG
SLMTEANIVE ENGNYALIM
|
|---|
| |