| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_0436 |
|---|
| Symbol | gatA |
|---|
| ID | 6374100 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | + |
|---|
| Start bp | 462202 |
|---|
| End bp | 463635 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642682954 |
|---|
| Product | aspartyl/glutamyl-tRNA amidotransferase subunit A |
|---|
| Protein accession | YP_001958881 |
|---|
| Protein GI | 189499411 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
|---|
| TIGRFAM ID | [TIGR00132] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.194973 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTATTTTT CCTCATACCA GAATCTGCGC AAAAGACTTC TCAGTCGTGA AATCAGTTGC
GAGACTGTTG TCCTTGACTA TCTCGAGCGA ATACGGAAAA ACCATGAAAG AAATGTCTAT
ATAACGGTTT TCAACGATCA GGCACTGCAA CGGGCAAAGG AACTTGACAG AAAGCTCGAG
GCAGGTGAAC AGCCAGGGAG ACTTTTTGGT CTTCCTATGG CAGTAAAGGA TAATCTGTCA
GTAAAGGATG CTTCGCTTAC CTGTGCTTCA AAAATTCTGG AGGGGTATAC CGCGGTCTAC
AATGCTACTG CTGTTGAAAG GCTGCTCAAA GAGGATGCTG TCTTTCTTGG CAAGGTGAAC
ATGGATGAGT TTGCAATGGG GAGCTCCAAT GAGAATTCAG CTTTCGGGCC GGTTCCAAAT
CCCTATGATG ACTCCAGGGT ACCCGGAGGA AGTTCCGGAG GCTCTGCCGC TGCTGTTGCT
GGAGACCTTG CAATGGTTGC TCTTGGATCG GATACCGGTG GTTCCGTCAG ACAGCCGGCA
GGGTTCTGCA ATGTCGTCGG TTTGAAGCCG ACTTACGGCA GAATATCCCG TTACGGTCTT
GTTGCGTTTG GTTCGTCCTT TGATCAGATT GGAATTCTCT CAAGGAATTG TGACGATGCT
GCACTTGTTC TGGGTGTAAT CGCAGGAAAA GATGCGGCTG ATACAACATC TTCACAGCAC
GTTGTTCCTG ATTATCTCTC AGAGATGGGC AGCGTAAGCC TGAAAGGCAT GAAAATCGGG
GTTCCTGAAG AATATTTCCC TGAAACGCTC GATCCCGGGG TTGCTCTTGC TGTCAGAAAC
CGTCTCGAAG AACTCCGGGA TGCCGGTGCG GAGCTTGTGG ATATTGCTCT GCCTGAAAGT
GATCATGCTA TTGCTGCCTA CTATATACTG ACGACCGCGG AAGCCTCTTC GAACCTTGCC
CGTTTCGACG GAGCGCGTTA CGGCTACCGT TCAGGGGACG CTTCCGATCT TTCGGGCATG
TATGTCAATT CGCGCTCGGA AGGATTTGGG GGCGAGGTCA AACGGAGAAT CATGCTGGGG
ACCTATGTGC TCTCCGCAGG ATACTACGAT ACCTATTACA AAAAGGCCCA ACAGGTCAGA
AGGGTTTTTC TTGACAGATA CAAGGAAGCG TTGGCGAAGG TTGATGTCAT CGCCGGACCA
ACCTCGCCGT TTCCTCCTTT CGGGATAGGA GATAAAATGG ATGAGCCGCT GGAGATGTAT
CTTGCCGATG TGTTTACGGT ACCGGCGAGC ATTGCCGGAC TGCCTGCGCT GAGTGTGCCT
GCCGGTTTTG ACCGTTCAGG ACTTCCCGTA GGACTTCAGC TCATTGGAGA TTTTTTTGAT
GAAGGAAAAC TTCTCGGGAT TGCACGGGAA ATTCAGCGTT CACAGGAAGA GTGA
|
|---|
| Protein sequence | MYFSSYQNLR KRLLSREISC ETVVLDYLER IRKNHERNVY ITVFNDQALQ RAKELDRKLE
AGEQPGRLFG LPMAVKDNLS VKDASLTCAS KILEGYTAVY NATAVERLLK EDAVFLGKVN
MDEFAMGSSN ENSAFGPVPN PYDDSRVPGG SSGGSAAAVA GDLAMVALGS DTGGSVRQPA
GFCNVVGLKP TYGRISRYGL VAFGSSFDQI GILSRNCDDA ALVLGVIAGK DAADTTSSQH
VVPDYLSEMG SVSLKGMKIG VPEEYFPETL DPGVALAVRN RLEELRDAGA ELVDIALPES
DHAIAAYYIL TTAEASSNLA RFDGARYGYR SGDASDLSGM YVNSRSEGFG GEVKRRIMLG
TYVLSAGYYD TYYKKAQQVR RVFLDRYKEA LAKVDVIAGP TSPFPPFGIG DKMDEPLEMY
LADVFTVPAS IAGLPALSVP AGFDRSGLPV GLQLIGDFFD EGKLLGIARE IQRSQEE
|
|---|
| |