| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_0404 |
|---|
| Symbol | |
|---|
| ID | 6374066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | + |
|---|
| Start bp | 429585 |
|---|
| End bp | 430307 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 642682921 |
|---|
| Product | tRNA pseudouridine synthase B |
|---|
| Protein accession | YP_001958850 |
|---|
| Protein GI | 189499380 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00439158 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.254846 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAAG CGAAAAAACT CTCGACAGTA AGTCCAACCG GTGATTTTCT CCTGGTTGAC
AAGCCTGTTG AATGGACATC TTTTGATGTT GTGGCGAAAA TTCGTAACAC CTATACCGGT
GCGGGGCTTC GCAGGAAAGT CGGGCATTGC GGTACACTTG ATCCAAAGGC CAGCGGTCTG
CTTATTCTCG CGACCGGCAG AAAAACAAAA CAGATCGCGT CACTCGAGGT TCTGGACAAG
ACCTATGAAG GGGTGATCAA GCTTGGAGTG ATGACTGAGA GTTTCGATGC TGAATTGCCT
GAATATGGAC AGTGCAGCGT CAGTCATCTT ACGGACAGAG AGATACATGA CGCGGCTGCC
GGACTTGAAG GCAGGTGTAT GCAAAAGCCT CCTATGTACT CGGCTGTATG GCATCAGGGA
AAGCGATTGT ATGAATTTGC CAGGAAGGGA CAGGATATAA AGGAACGAAA AACACGTGAG
ATAACAGTAA ACAGTTTTGA GATTACCGCT ATAGACCTTC CTTTTGTTCG TTTCAGAACG
AATGTTTCCA AAGGAGCATA TATACGGGTT CTTGCCGACG ATTTAGGGAG AAATCTTGCT
GTCGGGGGAT ATCTTTCTTC GTTGAGAAGG GTTGCGATCG GTGAGTACAG AATTGAGGAT
GCAAGAAGTG TTATCGATAC CGTCGAACGT ATCAAGCGTG AAGCAAACGA TTTAGCAGAG
TAG
|
|---|
| Protein sequence | MIEAKKLSTV SPTGDFLLVD KPVEWTSFDV VAKIRNTYTG AGLRRKVGHC GTLDPKASGL
LILATGRKTK QIASLEVLDK TYEGVIKLGV MTESFDAELP EYGQCSVSHL TDREIHDAAA
GLEGRCMQKP PMYSAVWHQG KRLYEFARKG QDIKERKTRE ITVNSFEITA IDLPFVRFRT
NVSKGAYIRV LADDLGRNLA VGGYLSSLRR VAIGEYRIED ARSVIDTVER IKREANDLAE
|
|---|
| |