| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_0392 |
|---|
| Symbol | |
|---|
| ID | 6374054 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | - |
|---|
| Start bp | 417349 |
|---|
| End bp | 418545 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 642682909 |
|---|
| Product | O-antigen polymerase |
|---|
| Protein accession | YP_001958838 |
|---|
| Protein GI | 189499368 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000178586 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.74185 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGACC GTAACATACA AATAGAGGAT ATACAATCAA ACCTCATCGT ATTCTTCGGA
TTTATTTTTC CTTTTTCTGT AGCTGTCGGG AATATTGTAG CCGCACTTAT CACGCTCCTG
TGGATCTTTC GCGGAAATCA TAAGGAAAAC TGGGCCTCAC TGAAAGGCAA CAAATTTGTT
CTTGCGACAC TGTGCTTCGT TGCCCTTTAC TTTGCAGGCT TATTGTGGAC TCTTGACATT
GATTCCGGTA TCCGGACACT ACAGAAAGAA TCCGTTTTAT TACTTATACC GATCTTTATG
CTTTTCATAC AAAAAAAGCA TCTCCATCGT TACATATTTG CTTTTCTTAT CTCGATATCA
TGCATGGTTC TCCTGTCATT TGCCATATAC TACGGCATCA TCCCGCCTCT TTCAGGAGCA
AAACAGTCAG ACCCCACTCC GTTCATGAGC CACATTTCAT ACAATCCATT TTTAACGATT
GCGATATACC TGCTTCTTTT TCTCATTCTC TTTGATGACA CACAAAGCAA AAGGAATAAG
ATTTTATTCT CTCTTGTCGT GCTGATTTTC AGCATCAACA TGTTTATAAC AAAAGGGAGG
GCCGGCCAGG CAATGTTCTT TGCAATGATT TTTATTACAA CAGTACAATA CTTCAACAAG
CAGAGAAAAA AAGGGTTGCT TGTTGCCGCC ATTCTGGTAC CGCTCATACT CTCAATCGCC
TATTCAACAA GCGATAATTT CAGCAACAGA ATGAATGCAA TAGTAGGCGA CGTACAAAAG
TATCAGGAAA ATAATAAAAA GACGTCAACC GGATTACGTC TTGTGTTTGC GGAAAATTCT
TTCGAAATCA TTCGAAACAA CCCTGTTTTC GGTGTCGGCA CCGGTGACTT TGCGCATGAA
TACGAGAAAA TAAATAACAA AAATACACCG GAACTCAGAC CGACAGAAAA CCCGCACAAC
ATGTATGTCC TTACAACGGT TCAACTTGGA ATAATTGGCC TTGTCTCGCT ATTGTCACTG
CTATTTTTTC AAACACAACT ATCAACATCA TCAAAAATTG ATTTTCAAAA GAAATTTGGC
CTTACCCTGC CCATATTATT TGGCATAATA ATGCTGAGTG ATTCGTATCT TAGAGGGCAC
TACACAACGA TGCTCTATGT ATATTTTAGT TCTTTCACTT ACAAGGTATA TGAATAA
|
|---|
| Protein sequence | MIDRNIQIED IQSNLIVFFG FIFPFSVAVG NIVAALITLL WIFRGNHKEN WASLKGNKFV
LATLCFVALY FAGLLWTLDI DSGIRTLQKE SVLLLIPIFM LFIQKKHLHR YIFAFLISIS
CMVLLSFAIY YGIIPPLSGA KQSDPTPFMS HISYNPFLTI AIYLLLFLIL FDDTQSKRNK
ILFSLVVLIF SINMFITKGR AGQAMFFAMI FITTVQYFNK QRKKGLLVAA ILVPLILSIA
YSTSDNFSNR MNAIVGDVQK YQENNKKTST GLRLVFAENS FEIIRNNPVF GVGTGDFAHE
YEKINNKNTP ELRPTENPHN MYVLTTVQLG IIGLVSLLSL LFFQTQLSTS SKIDFQKKFG
LTLPILFGII MLSDSYLRGH YTTMLYVYFS SFTYKVYE
|
|---|
| |