| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_0320 |
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| Symbol | |
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| ID | 6373980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium phaeobacteroides BS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010831 |
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| Strand | + |
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| Start bp | 319234 |
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| End bp | 323730 |
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| Gene Length | 4497 bp |
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| Protein Length | 1498 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 642682839 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001958770 |
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| Protein GI | 189499300 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.378981 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00933362 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATATTTT CACAGGGAGT TTCACCTTTC AAAGGTGATT TTTCAAAGAT AAAATTCAGC
ATCGCATCTC CTGAAAGCAT TCTTGCGCAT TCACGAGGAG AGGTGCTAAA ACCGGAGACT
ATCAATTATC GCACATTCAA GCCTGAGCGT GACGGCCTGA TGTGTGAGAA AATATTCGGC
CCCACGAAGG ATTGGGAATG TTATTGCGGC AAGTACAAAC GCGTCAGGTA TAAAGGTATT
ATCTGTGACC GCTGCGGAGT CGAGGTGACC ATGAAGAGCG TTCGTCGTGA ACGTATGGGG
CACATCTCTC TTGCCGTTCC GGTTGTTCAT ACATGGTTTT TCCGCTCTGT TCCCAGCAAA
ATCGGTGCCC TGCTCGATCT TTCAACCAAG GAACTTGAAC GGGTCATCTA CTATGAGGTC
TATGTGGTGA TCAATCCCGG TGAACCGGGA GAGAAGCAGG GAATAAAAAA ACTTGATCGC
CTGACAGAAG AGCAGTATTT CCAGATCATA ACCGAGTACG AGGACAATCA GGATCTTGAC
GATAACGATC CGGCAAAGTT CGTGGCCAAA ATGGGTGGAG AAGCCATTCA TACACTTCTT
AAAGGACTCG AACTCGATAC ACAGGCTGTT GATCTTCGCA AAATACTCAG GGAGAGCGGT
TCAGAGCAGA AGAGAGCCGA TGCCCTCAAA CGCCTTAAGG TTGTCGAGGC ATTCAGAAAA
AGTTTCGAGC CGGTAAAAAA GACAAGAAAG AAGTCCACCG GTCTTTTCCC CGAGGACGAA
GCTCCTGAAC CCTATGTGTA TGAAGGTAAC AAGCCGGAAT ACATGGTAAT GGAGGTTATA
CCGGTCATAC CTCCTGAATT GCGTCCGCTT GTCCCTCTTG AAGGAGGGCG GTTCGCGACC
TCCGATCTTA ATGATCTTTA TCGCAGGGTC ATTATCCGGA ATAACCGCTT GAAAAAGCTG
ATCGACATTC GTGCACCGGA GGTTATTCTG CGTAATGAGA AAAGAATGCT GCAGGAAGCT
GTCGATGCTC TTTTCGACAA CTCACGCAAA GCCAACGCAG TGAAAACCGG TGAGTCGAAC
AGGCCCCTGA AATCACTTTC CGATGCTCTC AAGGGAAAAC AGGGCAGATT CCGTCAGAAC
CTGCTCGGTA AGCGAGTTGA CTATTCCGGA AGGTCGGTCA TTGTTGTCGG ACCGGAGCTC
AAACTGCATG AGTGCGGACT GCCGAAAAGC ATGGCAATCG AGCTTTTCCA GCCGTTTGTT
ATCAGACGCC TCGTGGAGCG GGGTATCGCG AAATCCGTGA AATCAGCCAA AAAGCTTATT
GATAAAAAGG ATCCGATAGT CTGGGATGTA CTTGAAAAAG TTATTGACGG ACGTCCTGTA
CTGCTCAACC GTGCTCCAAC GCTTCATCGT TTGGGTATTC AGGCTTTTCA GCCGGTGCTG
ATCGAAGGCA AGGCAATACA GATTCACCCG CTGGTCTGTA CGGCGTTCAA CGCTGACTTT
GATGGTGACC AGATGGCGGT TCACGTCCCG CTTTCGCAGG AAGCACAACT CGAGGCGACA
CTGCTGATGC TCTCCTCTCA CAACCTCATT CTTCCCCAGT CGGGTAAGCC GGTTACCGTT
CCCTCTCAGG ATATGGTGCT GGGTATGTAC TACCTGACAA AGTCAAGGCT TGGGGAAAAA
GGTCAGGGCA AGCTCTTTTA TGGAACCGAA GAGGTGATGA TTGCTTTTAA CGAGGAGCGT
ATTGGTCTTC ACGCGCTTGT CTTCGTGCAC TATGACGGCC GTATTGAACA GAAGTTCGAT
CCGCTGAGAA TGCTCGATAT CATTCCGGAT GATCAGCCTG AACAGAAAGA GTGGCTGAAA
ACAAAGATCG GGGAAAACAA GATTCTGGTG ACAACAGTCG GCAGGGTGTT GTTTAACCGG
TACGTTCCGG AAAAAATCGG CTTTATCAAC AAGGTGATCG ACAAAAAAGG GGCCAAGGAT
CTCATTTCCA AGCTCTCAAG CGAGGTTGGA AACGTCGCTA CGGCCGAGTT TCTTGACAAC
ATCAAGCAGG TCGGCTTCCA CTTCGCAATG AAGGGAGGGC TCTCTATCGG GCTTGCTGAT
GCGATTATTC CTGAAGTCAA GGTTCAGCAT ATCAAGAAGG CTACCAAAGA GAGCACCAAG
ATCGTCAGAG AGTACAATCG AGGAACGCTC ACGGAAAACG AGCGGTACAA CCAGATTGTC
GATGTCTGGC AGAAGGTGAC AAACCTCGTC GCGGAGGAAT CCTACCAGAA GCTTCGCAAG
GACCGTTCAG GGTTCAATCC GCTGTTTATG ATGCTTGATT CCGGAGCTCG AGGCTCGAGA
GAACAGGTGC GTCAGTTGAC CGGTATGAGA GGGCTTATCG CCAGGCCGCA GAAATCCATG
TCCGGGCAGC CCGGTGAGAT TATCGAGAAT CCGATTATTT CCAACCTGAA AGAGGGGCTC
ACGGTGCTGG AGTATTTTGT CTCTACCCAT GGTGCCCGAA AAGGTCTTTC CGATACATCG
CTCAAAACGG CTGATGCAGG GTATCTGACA AGAAGACTGC ATGATGTCGC TCAGGATGTC
ATCGTCACCG AAGATGATTG CGGGACAACC AGAGGTATTC ATGTAGAACG CGGGATTGAA
GAAGAGACAG GCGGTCAGAT CAAGTTCAGT GAAAAAATCC GGGGCAGGGT CGCTTCGAGG
GATATTGTCG ATAACCTGAA CGATGTGGTC ATTCTTCCGG CAGGGGGTAT CATCACCGAT
GAGATTGCAG ATGCCATACA GAAAAATGCC GGTGTTGTCG AGGCCGATAT CCGATCGGTG
CTTACCTGTG AGGCAAAACA GGGTATCTGT TCCAAGTGTT ATGGTACCAA CCTTTCGGTG
CACAAACTTG TAGAAATAGG TGAAGCGGTA GGCGTTATCG CAGCACAGTC CATCGGTGAA
CCGGGAACAC AGCTGACGCT TCGTACCTTC CACCAGGGTG GTACGGCACA GGGCGGTATT
GCTGAAACCG AGACAAAGTC ATCTATGGAC GGACAGGTTG AATTTGAAAG CATCAGGAGT
GTGGAACAGG AGACCATCAA TGAAGACGGC ATGCCTGAAA CCGTTACTCT GGTGATCCAG
AAGAACGGCA AGATCAATAT TCTCGATCCT GATTCAGGTA AATTCCTGAA ACGCTACGAG
GTGCCTCATG GAGCGCATCT TGTCTGTAAG AACGGAGATA TTGTTAAAAA AGACGATGTA
CTGTTCAGCA GCGAACCGAA CAGTACGCAG ATTATTGCAG AAGTAGAGGG AGAGGTCAAA
TTTGTCGATA TCGATAAAGG TGTCACCTAT AAGGAGGAGG TTGACCCTCA GACCGGATAT
GTCCAGCATG TGATTATCAA CTGGCGCACA AAACTCCGGG CTTCGGAAAC AAGAGAGCCG
AGGATTCTGA TTGTCGACAA AGAGGGAGAA ACCCTCAAAA CCTATCCGGT CCCGATAAAA
TCCAATCTGT TTATCGAGAA CGGAAAGAAA GTGAAGATCG GTGATATGCT GGCCAAGGTG
CCGAGAAACC TTGATCGTGT AGGTGGCGAT ATTACCGCAG GTCTTCCGAA GGTAACCGAA
CTTTTCGAGG CACGTATTCC ATCTGATCCG GCAATAGTCT CTGAAATTGA CGGTTATGTC
GGCTTCGGGC CGCAACGCAG GAGCAGTAAG GAAATCAAGG TGAAAAACGA GTTCGGAGAG
GAAAAGAACT ACTATGTACA GGTCGGTAAG CACGTTCTTG CCAATGAGGG CGACGAGGTT
ACAGCCGGTG AACCGTTGAC TGATGGTGCA GTTTCTCCTC AGGATATTCT GAGAATTCAG
GGCCCTAACG CCGTGCAGCA GTATCTGGTG AATGAAATTC AGAAAGTCTA CCAGATCAAT
GCCGGTGTTG AGATCAATGA CAAGCATCTT GAGGTTATCG TACGTCAGAT GCTGCAGAAG
GTAAGGGTTG AAGAGCCTGG TGATACCGAA CTGCTTCCGG GAGACCTCAT TGACAGAACC
ATGTTTATCC GGGCCAACAG TGATGTCAGC GAAAAGGTAC GTGTGACGTC AAAAGGTGAC
GCGCCGGCAA GAATTCATGA AGGTCAGCTC TACAAGACCC GTGAGATAAT AAAACTCAAC
CGTGAGCTTC GCAGAAACAG CAAGCAGCTC ATCGATGTCG AGCCGGCATT GCAGGCTACT
TCTCATCCAG TGCTTCTGGG AATAACCAGT GCGGCTTTGC AGACTGAAAG CGTTATCTCC
GCGGCTTCTT TCCAGGAAAC CACCAAGGTG CTGACCGATG CCGCAGTTGC CGGAAAGATC
GATAATCTTG CCGGCTTGAA AGAAAACGTT ATTGTCGGAA AACTCATTCC TGCAGGAACC
GGACTCAAGA AGTACCTCAA GCTGAGCCTC GATATGCTTG CTGAAGGGAA AGAGAGCGCG
GATGCTTTGG CGGAAGAAGA AGCGGGTGCG GCAGAATCAG GAGAAGATGA TGCGTGA
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| Protein sequence | MIFSQGVSPF KGDFSKIKFS IASPESILAH SRGEVLKPET INYRTFKPER DGLMCEKIFG
PTKDWECYCG KYKRVRYKGI ICDRCGVEVT MKSVRRERMG HISLAVPVVH TWFFRSVPSK
IGALLDLSTK ELERVIYYEV YVVINPGEPG EKQGIKKLDR LTEEQYFQII TEYEDNQDLD
DNDPAKFVAK MGGEAIHTLL KGLELDTQAV DLRKILRESG SEQKRADALK RLKVVEAFRK
SFEPVKKTRK KSTGLFPEDE APEPYVYEGN KPEYMVMEVI PVIPPELRPL VPLEGGRFAT
SDLNDLYRRV IIRNNRLKKL IDIRAPEVIL RNEKRMLQEA VDALFDNSRK ANAVKTGESN
RPLKSLSDAL KGKQGRFRQN LLGKRVDYSG RSVIVVGPEL KLHECGLPKS MAIELFQPFV
IRRLVERGIA KSVKSAKKLI DKKDPIVWDV LEKVIDGRPV LLNRAPTLHR LGIQAFQPVL
IEGKAIQIHP LVCTAFNADF DGDQMAVHVP LSQEAQLEAT LLMLSSHNLI LPQSGKPVTV
PSQDMVLGMY YLTKSRLGEK GQGKLFYGTE EVMIAFNEER IGLHALVFVH YDGRIEQKFD
PLRMLDIIPD DQPEQKEWLK TKIGENKILV TTVGRVLFNR YVPEKIGFIN KVIDKKGAKD
LISKLSSEVG NVATAEFLDN IKQVGFHFAM KGGLSIGLAD AIIPEVKVQH IKKATKESTK
IVREYNRGTL TENERYNQIV DVWQKVTNLV AEESYQKLRK DRSGFNPLFM MLDSGARGSR
EQVRQLTGMR GLIARPQKSM SGQPGEIIEN PIISNLKEGL TVLEYFVSTH GARKGLSDTS
LKTADAGYLT RRLHDVAQDV IVTEDDCGTT RGIHVERGIE EETGGQIKFS EKIRGRVASR
DIVDNLNDVV ILPAGGIITD EIADAIQKNA GVVEADIRSV LTCEAKQGIC SKCYGTNLSV
HKLVEIGEAV GVIAAQSIGE PGTQLTLRTF HQGGTAQGGI AETETKSSMD GQVEFESIRS
VEQETINEDG MPETVTLVIQ KNGKINILDP DSGKFLKRYE VPHGAHLVCK NGDIVKKDDV
LFSSEPNSTQ IIAEVEGEVK FVDIDKGVTY KEEVDPQTGY VQHVIINWRT KLRASETREP
RILIVDKEGE TLKTYPVPIK SNLFIENGKK VKIGDMLAKV PRNLDRVGGD ITAGLPKVTE
LFEARIPSDP AIVSEIDGYV GFGPQRRSSK EIKVKNEFGE EKNYYVQVGK HVLANEGDEV
TAGEPLTDGA VSPQDILRIQ GPNAVQQYLV NEIQKVYQIN AGVEINDKHL EVIVRQMLQK
VRVEEPGDTE LLPGDLIDRT MFIRANSDVS EKVRVTSKGD APARIHEGQL YKTREIIKLN
RELRRNSKQL IDVEPALQAT SHPVLLGITS AALQTESVIS AASFQETTKV LTDAAVAGKI
DNLAGLKENV IVGKLIPAGT GLKKYLKLSL DMLAEGKESA DALAEEEAGA AESGEDDA
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